PROJECT NAME
GOLD Project ID
Gp0005400  
Project Name
Eubacterium sulci ATCC 35585  
Other Names
  
Legacy ER Project ID
15510  
Legacy GOLD ID
Gi04959  
NCBI BioProject Name Eubacterium sulci ATCC 35585
NCBI BioProject ID 53047
NCBI BioProject Accession
PRJNA53047  
NCBI Locus Tag
HMPREF9092  
NCBI BioSample Accession
SAMN02641587  
PI BCM-HGSC
Added By Nikos Kyrpides on 2009-08-22
Last Modified By Jon Bertsch on 2014-06-14
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Eubacterium sulci ATCC 35585
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005400
Organism Name
Eubacterium sulci ATCC 35585  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Eubacterium  
Genus Synonyms
  
Species
Eubacterium sulci  
Subspecies
  
Species Synonyms
  
Strain
ATCC 35585  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 35585  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8369  
Exemplar Name
Eubacterium sulci  
Taxon DOI
10.1601/tx.4272  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 888727
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiales Family XIII. Incertae Sedis  
NCBI Genus
  
NCBI Species
[Eubacterium] sulci  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ006963
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9092  
Show in DACC?
Yes  
HMP Project Status
Targeted  
BEI Status
  
NCBI Submission Status
2. project has NCBI project id  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
return to targeted list, BEI is making DNA  
DNA Received
No  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
HOMD: tax_467  

 

 

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