PROJECT NAME
GOLD Project ID
Gp0005399  
Project Name
Aggregatibacter sp. oral taxon 458 W10330  
Other Names
  
Legacy ER Project ID
15483  
Legacy GOLD ID
Gi04932  
NCBI BioProject Name Aggregatibacter sp. oral taxon 458 str. W10330
NCBI BioProject ID 198875
NCBI BioProject Accession
PRJNA198875  
NCBI Locus Tag
HMPREF9065  
NCBI BioSample Accession
SAMN02436891  
PI Fulton L
Added By Nikos Kyrpides on 2009-08-22 00:00:00.0
Last Modified By Auto script update processes on 2014-10-31 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Aggregatibacter sp. oral taxon 458 W10330
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005399
Organism Name
Aggregatibacter sp. oral taxon 458 W10330  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Aggregatibacter  
Genus Synonyms
  
Species
Aggregatibacter sp. oral taxon 458  
Subspecies
  
Species Synonyms
  
Strain
W10330  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1321772
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pasteurellales  
NCBI Family
Pasteurellaceae  
NCBI Genus
Aggregatibacter  
NCBI Species
Aggregatibacter sp. oral taxon 458  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Singles
Diseases
  
Known Habitats Host
Oral cavity
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
HMP METADATA
HMP ID
9065  
Show in DACC?
Yes  
HMP Project Status
DNA Received  
BEI Status
  
NCBI Submission Status
2. project has NCBI project id  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Subgingival plaque  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2013-02-27  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
HOMD: tax_458  

 

 

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