PROJECT NAME
GOLD Project ID
Gp0005241  
Project Name
Olsenella profusa D315A-29, DSM 13989  
Other Names
  
Legacy ER Project ID
15540  
Legacy GOLD ID
Gi04990  
NCBI BioProject Name Olsenella profusa DSM 13989
NCBI BioProject ID 64731
NCBI BioProject Accession
PRJNA64731  
NCBI Locus Tag
HMPREF9121  
NCBI BioSample Accession
  
PI Dodson R.
Added By Nikos Kyrpides on 2009-08-23
Last Modified By Elizabeth Lobos on 2012-08-03
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005241
Organism Name
Olsenella profusa D315A-29, DSM 13989  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Olsenella  
Genus Synonyms
  
Species
Olsenella profusa  
Subspecies
  
Species Synonyms
  
Strain
D315A-29  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 13989  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5757  
Exemplar Name
Olsenella profusa  
Taxon DOI
10.1601/tx.5757  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 997349
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Coriobacteriia  
NCBI Order
Coriobacteriales  
NCBI Family
Atopobiaceae  
NCBI Genus
Olsenella  
NCBI Species
Olsenella profusa  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9121  
Show in DACC?
Yes  
HMP Project Status
In Progress  
BEI Status
  
NCBI Submission Status
2. project has NCBI project id  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
Project returned to targeted: we have DNA that can be sent to another center for sequencing  
DNA Received
Yes  
Date DNA Received
2011-08-25  
Date Sequencing Begins
2011-08-29  
Date Draft Sequencing Completed
2011-09-14  
Cross Reference ID
HOMD: tax_806  

 

 

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