Studies
|
47,487 |
|
Biosamples
|
121,418 |
|
Sequencing Projects
|
388,852 |
|
Analysis Projects
|
310,141 |
| Organisms | 403,380 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0005232
|
|
Project Name
|
Desulfomicrobium orale DSM 12838
|
|
Other Names
|
|
|
Legacy ER Project ID
|
15500
|
|
Legacy GOLD ID
|
Gi04949
|
| NCBI BioProject Name | Desulfomicrobium orale DSM 12838 |
|
NCBI BioProject ID
|
53027 |
|
NCBI BioProject Accession
|
PRJNA53027 |
|
NCBI Locus Tag
|
HMPREF9082
|
|
NCBI BioSample Accession
|
|
| PI | BCM-HGSC |
| Added By |
Nikos Kyrpides
on 2009-08-22 |
| Last Modified By |
Nikos Kyrpides
on 2012-11-20 |
| Project Comments |
|
|
Project Status
|
targeted
|
|
Project Relevance
|
Human Microbiome Project (HMP) Medical |
|
Sequencing Center
|
|
|
Collaborating Institute
|
|
|
Funding Agency
|
NIH
(USA)
|
|
Project Description
|
Reference genome for the Human Microbiome Project
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Human Microbiome Project (HMP) Reference Genomes |
| Organism |
Desulfomicrobium orale DSM 12838 |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0
|
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Targeted |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
Level 2: High-Quality Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0005232 |
| Organism Name |
Desulfomicrobium orale DSM 12838
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-DELTA
|
| Genus |
Desulfomicrobium
|
| Genus Synonyms |
|
| Species |
Desulfomicrobium orale
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
NY678
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 12838
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.3522
|
| Exemplar Name |
Desulfomicrobium orale
|
| Taxon DOI |
10.1601/tx.3522
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
888061 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Deltaproteobacteria
|
| NCBI Order |
Desulfovibrionales
|
| NCBI Family |
Desulfomicrobiaceae
|
| NCBI Genus |
Desulfomicrobium
|
| NCBI Species |
Desulfomicrobium orale
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Oral cavity
|
| Specific Ecosystem |
Subgingival plaque
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AJ251623 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Host Human oral cavity |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
| HMP METADATA | |
|---|---|
| HMP ID |
9082
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Targeted
|
| BEI Status |
|
| NCBI Submission Status |
2. project has NCBI project id
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Oral
|
| HMP Isolation Body Sample Subsite |
Periodontal
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
|
| Project Comments |
return to targeted list, can't make DNA
|
| DNA Received |
No
|
| Date DNA Received |
|
| Date Sequencing Begins |
|
| Date Draft Sequencing Completed |
|
| Cross Reference ID |
HOMD: tax_703
|
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