PROJECT NAME
GOLD Project ID
Gp0005183  
Project Name
Cyanobacterium aponinum PCC 10605  
Other Names
  
Legacy ER Project ID
15033  
Legacy GOLD ID
Gi04526, Gc02432  
NCBI BioProject Name Cyanobacterium aponinum PCC 10605
NCBI BioProject ID 158691
NCBI BioProject Accession
PRJNA158691  
NCBI Locus Tag
Cyan10605  
NCBI BioSample Accession
SAMN02261329  
PI Cheryl Kerfeld
Added By Nikos Kyrpides on 2009-07-21
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA-PCC
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The CyanoGEBA Sequencing Project is part of the DOE Joint Genome Institute?s Genomic Encyclopedia of Bacteria and Archaea initiative. The CyanoGEBA project is a collaboration between the JGI and the Pasteur Culture Collection aimed at improving sequencing coverage of the cyanobacterial phylum based on phylogenetic criteria.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 110(3):1053-8 Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies GEBA-PCC
Analysis Projects Cyanobacterium aponinum PCC 10605
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
35  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0005183
Organism Name
Cyanobacterium aponinum PCC 10605  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Cyanobacterium  
Genus Synonyms
  
Species
Cyanobacterium aponinum  
Subspecies
  
Species Synonyms
  
Strain
PCC 10605  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
PCC 10605  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 755178
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Chroococcales  
NCBI Family
Cyanobacteriaceae  
NCBI Genus
Cyanobacterium  
NCBI Species
Cyanobacterium aponinum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms Nitrogen fixation
Phenotypes
  
Energy Sources Photoheterotroph

 

 

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