PROJECT NAME
GOLD Project ID
Gp0005152  
Project Name
Candidatus Liberibacter solanacearum CLso-ZC1  
Other Names
  
Legacy ER Project ID
15016  
Legacy GOLD ID
Gi04509, Gc01561  
NCBI BioProject Name Candidatus Liberibacter solanacearum CLso-ZC1
NCBI BioProject ID 39273
NCBI BioProject Accession
PRJNA39273  
NCBI Locus Tag
CKC  
NCBI BioSample Accession
  
PI
Added By Nikos Kyrpides on 2009-07-10
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Plant Pathogen
Sequencing Center
  
Collaborating Institute U.S. Department of Agriculture (France)
Funding Agency U.S. Department of Agriculture (France)
Project Description
This unculturable bacterium causes Zebra Chip disease of potato. The bacterium was identified in 2008 and named as Candidatus Liberibacter solanacearum. The Zebra Chip disease results in millions of dollars loss for U.S. potato industry.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 6(4):e19135 The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Candidatus Liberibacter solanacearum CLso-ZC1
Analysis Projects Candidatus Liberibacter solanacearum CLso-ZC1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
35  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0005152
Organism Name
Candidatus Liberibacter solanacearum CLso-ZC1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Candidatus Liberibacter  
Genus Synonyms
  
Species
Candidatus Liberibacter solanacearum  
Subspecies
  
Species Synonyms
  
Strain
CLso-ZC1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 658172
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Candidatus Liberibacter  
NCBI Species
Candidatus Liberibacter solanacearum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Bactericera cockerelli  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Zebra Chip
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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