| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0005152
|
|
Project Name
|
Candidatus Liberibacter solanacearum CLso-ZC1
|
|
Other Names
|
|
|
Legacy ER Project ID
|
15016
|
|
Legacy GOLD ID
|
Gi04509, Gc01561
|
| NCBI BioProject Name | Candidatus Liberibacter solanacearum CLso-ZC1 |
|
NCBI BioProject ID
|
39273 |
|
NCBI BioProject Accession
|
PRJNA39273 |
|
NCBI Locus Tag
|
CKC
|
|
NCBI BioSample Accession
|
|
| PI | |
| Added By |
Nikos Kyrpides
on 2009-07-10 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Plant Pathogen Agricultural |
|
Sequencing Center
|
U.S. Department of Agriculture
(France)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Agriculture
(France)
|
|
Project Description
|
This unculturable bacterium causes Zebra Chip disease of potato. The bacterium was identified in 2008 and named as Candidatus Liberibacter solanacearum. The Zebra Chip disease results in millions of dollars loss for U.S. potato industry.
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
PloS one
6(4):e19135
The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Candidatus Liberibacter solanacearum CLso-ZC1 |
| Analysis Projects |
Candidatus Liberibacter solanacearum CLso-ZC1 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
35
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0005152 |
| Organism Name |
Candidatus Liberibacter solanacearum CLso-ZC1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
|
| Genus Synonyms |
|
| Species |
Candidatus Liberibacter solanacearum CLso-ZC1
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
CLso-ZC1
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
658172 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Rhizobiales
|
| NCBI Family |
Rhizobiaceae
|
| NCBI Genus |
Liberibacter
|
| NCBI Species |
Candidatus Liberibacter solanacearum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Plants
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
Bactericera cockerelli
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
Zebra Chip |
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
Heterotroph |
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
