Studies
|
47,492 |
|
Biosamples
|
121,670 |
|
Sequencing Projects
|
389,193 |
|
Analysis Projects
|
310,436 |
| Organisms | 403,423 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0005152
|
|
Project Name
|
Candidatus Liberibacter solanacearum CLso-ZC1
|
|
Other Names
|
|
|
Legacy ER Project ID
|
15016
|
|
Legacy GOLD ID
|
Gi04509, Gc01561
|
| NCBI BioProject Name | Candidatus Liberibacter solanacearum CLso-ZC1 |
|
NCBI BioProject ID
|
39273 |
|
NCBI BioProject Accession
|
PRJNA39273 |
|
NCBI Locus Tag
|
CKC
|
|
NCBI BioSample Accession
|
|
| PI | |
| Added By |
Nikos Kyrpides
on 2009-07-10 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Plant Pathogen Agricultural |
|
Sequencing Center
|
U.S. Department of Agriculture
(France)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Agriculture
(France)
|
|
Project Description
|
This unculturable bacterium causes Zebra Chip disease of potato. The bacterium was identified in 2008 and named as Candidatus Liberibacter solanacearum. The Zebra Chip disease results in millions of dollars loss for U.S. potato industry.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
PloS one
6(4):e19135
The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease.
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|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Candidatus Liberibacter solanacearum CLso-ZC1 |
| Organism |
Candidatus Liberibacter solanacearum CLso-ZC1 |
| Analysis Projects |
Candidatus Liberibacter solanacearum CLso-ZC1 |
| Number of Analysis Projects (AP) |
1
|
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
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Contamination Screening Input
|
|
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DNA Amplification Method
|
|
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Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
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Library Screening Method
|
|
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Number Of Reads
|
|
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Read Size
|
|
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Vector
|
|
| GC Percent |
35
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0005152 |
| Organism Name |
Candidatus Liberibacter solanacearum CLso-ZC1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
|
| Genus Synonyms |
|
| Species |
Candidatus Liberibacter solanacearum CLso-ZC1
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
CLso-ZC1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
658172 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Rhizobiales
|
| NCBI Family |
Rhizobiaceae
|
| NCBI Genus |
Liberibacter
|
| NCBI Species |
Candidatus Liberibacter solanacearum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Plants
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
Bactericera cockerelli
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
Zebra Chip |
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
Heterotroph |
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