PROJECT INFORMATION
GOLD Project ID
Gp0005076  
Project Name
Actinomyces sp. oral taxon 848 F0332  
Other Names
  
Legacy ER Project ID
14918  
Legacy GOLD ID
Gi04398  
NCBI BioProject Name Actinomyces sp. oral taxon 848 str. F0332
NCBI BioProject ID 38311
NCBI BioProject Accession PRJNA38311
NCBI Locus Tag
HMPREF0972  
NCBI BioSample Accession SAMN00008757
PI Weinstock, G
Added By Nikos Kyrpides on 2009-06-07
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Comparative analysis
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX016706
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2800259606
Library Layout PAIRED
Library Instrument 454 GS FLX
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Actinomyces sp. oral taxon 848 F0332
Analysis Projects Actinomyces sp. oral taxon 848 F0332
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005076
Organism Name
Actinomyces sp. oral taxon 848 F0332  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinomyces  
Genus Synonyms
  
Species
Actinomyces sp. oral taxon 848  
Subspecies
oral taxon 848  
Species Synonyms
  
Strain
F0332  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
BEI HM-90  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 649743
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Actinomycetales  
NCBI Family
Actinomycetaceae  
NCBI Genus
Actinomyces  
NCBI Species
Actinomyces sp. oral taxon 848  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Eye infection
Lung infection
Oral abscesses
Septicemia
Known Habitats Human intestinal microflora
Host
Human oral cavity
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
HMP METADATA
HMP ID
972  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2009-04-29  
Date Sequencing Begins
2009-06-29  
Date Draft Sequencing Completed
2009-07-30  
Cross Reference ID
HOMD: tax_848  

 

 

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