PROJECT INFORMATION
GOLD Project ID
Gp0005071  
Project Name
Dactylococcopsis salina PCC 8305  
Other Names
  
Legacy ER Project ID
14832  
Legacy GOLD ID
Gi04310, Gc02429  
NCBI BioProject Name Dactylococcopsis salina PCC 8305
NCBI BioProject ID 158703
NCBI BioProject Accession PRJNA158703
NCBI Locus Tag
Dacsa  
NCBI BioSample Accession SAMN02261331
PI Cheryl Kerfeld
Added By Cheryl Kerfeld on 2009-05-08
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Tree of Life
GEBA-PCC
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The CyanoGEBA Sequencing Project is part of the DOE Joint Genome Institute?s Genomic Encyclopedia of Bacteria and Archaea initiative. The CyanoGEBA project is a collaboration between the JGI and the Pasteur Culture Collection aimed at improving sequencing coverage of the cyanobacterial phylum based on phylogenetic criteria.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 110(3):1053-8 Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.
Other Publications
  
PROJECT COMPOSITION
Study GEBA-PCC
Analysis Projects Dactylococcopsis salina PCC 8305
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Illumina GAIIx
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0005071
Organism Name
Dactylococcopsis salina PCC 8305  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Dactylococcopsis  
Genus Synonyms
  
Species
Dactylococcopsis salina  
Subspecies
  
Species Synonyms
  
Strain
PCC 8305  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
PCC 8305  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.641  
Exemplar Name
Dactylococcopsis (Myxobaktron) salina  
Taxon DOI
10.1601/tx.641  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 13035
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Synechococcales  
NCBI Family
Synechococcaceae  
NCBI Genus
Dactylococcopsis  
NCBI Species
Dactylococcopsis salina  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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