PROJECT NAME
GOLD Project ID
Gp0005045  
Project Name
Helicobacter canadensis MIT 98-5491, ATCC 700968  
Other Names
  
Legacy ER Project ID
14911  
Legacy GOLD ID
Gc01037, Gi10746  
NCBI BioProject Name Helicobacter canadensis MIT 98-5491
NCBI BioProject ID 30719
NCBI BioProject Accession
PRJNA30719  
NCBI Locus Tag
HCAN  
NCBI BioSample Accession
SAMN00004577  
PI Pallen M
Added By Nikos Kyrpides on 2009-06-05 00:00:00.0
Last Modified By Jon Bertsch on 2014-06-14 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Comparative analysis
Medical
Sequencing Center Baylor College of Medicine
Collaborating Institute London School of Hygiene and Tropical Medicine
Funding Agency
  
Project Description
Emerging human pathogen  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Database
  
Genome Publications Journal of bacteriology 191(17):5566-7 Genome sequence of the emerging pathogen Helicobacter canadensis.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Helicobacter canadensis MIT 98-5491, ATCC 700968
Analysis Projects Helicobacter canadensis MIT 98-5491, ATCC 700968
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
4733953  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003605
Organism Name
Helicobacter canadensis MIT 98-5491, ATCC 700968  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Helicobacter  
Genus Synonyms
  
Species
Helicobacter canadensis  
Subspecies
  
Species Synonyms
  
Strain
MIT 98-5491  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
LCDC 16143  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.3838  
Exemplar Name
Helicobacter canadensis  
Taxon DOI
10.1601/tx.3838  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 537970
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Helicobacteraceae  
NCBI Genus
Helicobacter  
NCBI Species
Helicobacter canadensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF262037
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Gastroenteritis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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