PROJECT NAME
GOLD Project ID
Gp0005039  
Project Name
Sphaerochaeta pleomorpha Grapes  
Other Names
  
Legacy ER Project ID
14787  
Legacy GOLD ID
Gi04281, Gc02042  
NCBI BioProject Name Sphaerochaeta pleomorpha str. Grapes
NCBI BioProject ID 50049
NCBI BioProject Accession
PRJNA50049  
NCBI Locus Tag
SpiGrapes  
NCBI BioSample Accession
SAMN02261363  
PI Frank Loeffler
Added By Nikos Kyrpides on 2009-04-18 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Tennessee (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Spirochaeta sp. Grapes genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies CSP_300147_796038
Analysis Projects Sphaerochaeta pleomorpha Grapes
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0005039
Organism Name
Sphaerochaeta pleomorpha Grapes  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Sphaerochaeta  
Genus Synonyms
  
Species
Sphaerochaeta pleomorpha  
Subspecies
  
Species Synonyms
  
Strain
Grapes  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 22778  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.22803  
Exemplar Name
Sphaerochaeta pleomorpha  
Taxon DOI
10.1601/tx.22803  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 158190
NCBI Kingdom
  
NCBI Phylum
Spirochaetes  
NCBI Class
Spirochaetia  
NCBI Order
Spirochaetales  
NCBI Family
Spirochaetaceae  
NCBI Genus
Sphaerochaeta  
NCBI Species
Sphaerochaeta pleomorpha  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lotic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Pleomorphic-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
20-25 C  
Salinity
  
pH
6.5-7.5  
Cell Diameter
0.5-2.5 um  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Diseases None
Known Habitats Aquatic
Fresh water
Sediment
Metabolisms Utilize carbohydrates
Phenotypes
  
Energy Sources
  

 

 

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