PROJECT NAME
GOLD Project ID
Gp0004995  
Project Name
Hydrogenobacter thermophilus TK-6, DSM 6534  
Other Names
  
Legacy ER Project ID
14738  
Legacy GOLD ID
Gi04228, Gc01207  
NCBI BioProject Name Hydrogenobacter thermophilus TK-6
NCBI BioProject ID 34131
NCBI BioProject Accession
PRJDA34131  
NCBI Locus Tag
HTH  
NCBI BioSample Accession
  
PI Hiroyuki Arai
Added By Nikos Kyrpides on 2009-04-12
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Comparative analysis
Sequencing Center
  
Collaborating Institute University of Tokyo (Switzerland)
Funding Agency
  
Project Description
This strain will be used for comparative genome analysis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 192(10):2651-2 Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Hydrogenobacter thermophilus TK-6, DSM 6534
Analysis Projects Hydrogenobacter thermophilus TK-6, DSM 6534
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3-4 kb, 40 kb  
Number Of Reads
18050 Sanger  
Read Size
  
Vector
  
GC Percent
44  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0003221
Organism Name
Hydrogenobacter thermophilus TK-6, DSM 6534  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Hydrogenobacter  
Genus Synonyms
  
Species
Hydrogenobacter thermophilus  
Subspecies
  
Species Synonyms
  
Strain
TK-6  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 6534  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.431  
Exemplar Name
Hydrogenobacter thermophilus  
Taxon DOI
10.1601/tx.431  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 608538
NCBI Kingdom
  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Aquificales  
NCBI Family
Aquificaceae  
NCBI Genus
Hydrogenobacter  
NCBI Species
Hydrogenobacter thermophilus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID Z30214
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
70  
Salinity
  
pH
  
Cell Diameter
0.3 - 0.5 um  
Cell Length
2 - 3 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Hot spring
Soil
Metabolisms Hydrogen oxidizer
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?