PROJECT NAME
GOLD Project ID
Gp0004947  
Project Name
Pseudomonas syringae pv. aptata DSM 50252  
Other Names
  
Legacy ER Project ID
14929  
Legacy GOLD ID
Gi04409  
NCBI BioProject Name Pseudomonas syringae pv. aptata str. DSM 50252
NCBI BioProject ID 33221
NCBI BioProject Accession
PRJNA33221  
NCBI Locus Tag
PSYAP  
NCBI BioSample Accession
SAMN02471325  
PI Jeff Dangl
Added By Jeff Dangl on 2009-06-08
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Agricultural
Plant Pathogen
Sequencing Center
  
Collaborating Institute University of North Carolina, Chapel Hill (USA)
Funding Agency
  
Project Description
Pseudomonas syringae pv. aptata str. DSM 50252 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Database
  
Genome Publications PLoS pathogens 7(7):e1002132 Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Comparative Genomics of Pseudomonas syringae (UNC)
Analysis Projects Pseudomonas syringae pv. aptata DSM 50252
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Solexa
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004947
Organism Name
Pseudomonas syringae pv. aptata DSM 50252  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas syringae  
Subspecies
  
Species Synonyms
  
Strain
DSM 50252  
Strain Synonyms
  
Serovar-Biovar
pv. aptata  
Culture Collection ID
DSM 50252  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 629268
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas syringae  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Plant rot
Known Habitats Plants
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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