PROJECT INFORMATION
GOLD Project ID
Gp0004792  
Project Name
Frankia symbiont of Datisca glomerata Dg1  
Other Names
  
Legacy ER Project ID
14981  
Legacy GOLD ID
Gi04474, Gc01863  
NCBI BioProject Name Frankia symbiont of Datisca glomerata
NCBI BioProject ID 39113
NCBI BioProject Accession PRJNA39113
NCBI Locus Tag
FsymDg  
NCBI BioSample Accession SAMN00713636
PI David Benson
Added By Nikos Kyrpides on 2009-07-02
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Frankia symbiont of Datisca glomerata strain 4085684 genome sequencing.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Wikipedia
Information
Database
  
Genome Publications Journal of bacteriology 193(24):7017-8 Genome sequence of Candidatus Frankia datiscae Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata.
Other Publications
  
PROJECT COMPOSITION
Study CSP_776749
Analysis Projects Frankia symbiont of Datisca glomerata Dg1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0004792
Organism Name
Frankia symbiont of Datisca glomerata Dg1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Frankia  
Genus Synonyms
  
Species
Frankia symbiont of Datisca glomerata  
Subspecies
  
Species Synonyms
  
Strain
Dg1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 656024
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Frankiales  
NCBI Family
Frankiaceae  
NCBI Genus
Frankia  
NCBI Species
Frankia symbiont of Datisca glomerata  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Datisca glomerata  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Plant symbiont
Root nodule
Soil
Host
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources Chemoorganotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?