Studies
|
56,028 |
|
Biosamples
|
191,558 |
|
Sequencing Projects
|
515,647 |
|
Analysis Projects
|
381,514 |
| Organisms | 480,483 |
| PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
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Gp0004791
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Project Name
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Bacillus subtilis natto BEST195
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Other Names
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Legacy ER Project ID
|
14876
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Legacy GOLD ID
|
Gi04355, Gc01442
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| NCBI BioProject Name | Bacillus subtilis subsp. natto BEST195 | ||||||||||||||||||
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NCBI BioProject Accession
|
PRJDA38027 |
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NCBI Locus Tag
|
BSNT
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NCBI BioSample Accession
|
SAMD00016353 |
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Source Sample ID
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| PI | Sakakibara,Y | ||||||||||||||||||
| Added By | Nikos Kyrpides on 2009-05-21 | ||||||||||||||||||
| Last Modified By | Supratim Mukherjee on 2017-10-18 | ||||||||||||||||||
| Project Comments |
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Project Status
|
Complete and Published
|
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Project Relevance
|
Biotechnological |
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Sequencing Center
|
Keio University
(Japan)
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Collaborating Institute
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Funding Agency
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Project Description
|
Bacillus subtilis subsp. natto BEST195 genome sequencing project
|
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| Is JGI Project |
No
|
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Project Information Visibility
|
Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
|
BMC genomics: 11(243):243 Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data. PubMed: 20398357 DOI: 10.1186/1471-2164-11-243 PloS one: 9(10):e109999 Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads. PubMed: 25329997 DOI: 10.1371/journal.pone.0109999 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Bacillus subtilis natto BEST195 |
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| Organism |
Bacillus subtilis natto BEST195 |
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| Analysis Projects |
Bacillus subtilis natto BEST195 |
||||||||||||||||||
| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina GAIIx |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
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Library Screening Method
|
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|
Number Of Reads
|
15300000
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
44
|
| Chromosome Count |
1
|
| Plasmid Count |
1
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0004791 |
| Organism Name |
Bacillus subtilis natto BEST195
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Bacillus
|
| Genus Synonyms |
|
| Species |
Bacillus subtilis
|
| Subspecies |
natto
|
| Species Synonyms |
|
| Strain |
BEST195
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
645657 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacillota
|
| NCBI Class |
Bacilli
|
| NCBI Order |
Bacillales
|
| NCBI Family |
Bacillaceae
|
| NCBI Genus |
Bacillus
|
| NCBI Species |
Bacillus subtilis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Food production
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Sporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Soil |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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