PROJECT NAME
GOLD Project ID
Gp0004699  
Project Name
Pyramidobacter piscolens W5455  
Other Names
  
Legacy ER Project ID
275  
Legacy GOLD ID
Gi03844  
NCBI BioProject Name Pyramidobacter piscolens W5455
NCBI BioProject ID 34581
NCBI BioProject Accession
PRJNA34581  
NCBI Locus Tag
HMPREF7215  
NCBI BioSample Accession
SAMN00002506  
PI Dodson R.
Added By Heather Creasy on 2009-01-10 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Pyramidobacter piscolens W5455
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004699
Organism Name
Pyramidobacter piscolens W5455  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SYNERGISTETES  
Genus
Pyramidobacter  
Genus Synonyms
  
Species
Pyramidobacter piscolens  
Subspecies
  
Species Synonyms
  
Strain
W5455, JCVIHMP089  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 21147  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14315  
Exemplar Name
Pyramidobacter piscolens  
Taxon DOI
10.1601/tx.14315  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 352165
NCBI Kingdom
  
NCBI Phylum
Synergistetes  
NCBI Class
Synergistia  
NCBI Order
Synergistales  
NCBI Family
Synergistaceae  
NCBI Genus
Pyramidobacter  
NCBI Species
Pyramidobacter piscolens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Skin  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID EU309492
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
0.7 - 0.8 um  
Cell Length
0.8 - 2.2 um  
Color
Grey  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
7215  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
HOMD: tax_357  

 

 

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