PROJECT NAME
GOLD Project ID
Gp0004684  
Project Name
Emticicia oligotrophica GPTSA100-15, DSM 17448  
Other Names
  
Legacy ER Project ID
14518  
Legacy GOLD ID
Gi04017, Gc02231  
NCBI BioProject Name Emticicia oligotrophica DSM 17448
NCBI BioProject ID 60431
NCBI BioProject Accession
PRJNA60431  
NCBI Locus Tag
Emtol  
NCBI BioSample Accession
SAMN02232019  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-01-25
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Emticicia oligotrophica GPTSA100-15, DSM 17448
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
36  
Chromosome Count
1  
Plasmid Count
5  
ORGANISM NAME
GOLD Organism ID Go0004684
Organism Name
Emticicia oligotrophica GPTSA100-15, DSM 17448  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Emticicia  
Genus Synonyms
  
Species
Emticicia oligotrophica  
Subspecies
  
Species Synonyms
  
Strain
GPTSA100-15, DSM 17448  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 17448  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10059  
Exemplar Name
Emticicia oligotrophica  
Taxon DOI
10.1601/tx.10059  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 929562
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Cytophagaceae  
NCBI Genus
Emticicia  
NCBI Species
Emticicia oligotrophica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY904352
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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