PROJECT INFORMATION
GOLD Project ID
Gp0004671  
Project Name
Vibrio cholerae sv. O1 O395  
Other Names
  
Legacy ER Project ID
14323  
Legacy GOLD ID
Gi03807, Gc00985  
NCBI BioProject Name Vibrio cholerae O395
NCBI BioProject ID 32853
NCBI BioProject Accession PRJNA32853
NCBI Locus Tag
VC395  
NCBI BioSample Accession
PI Lei Wang
Added By Nikos Kyrpides on 2009-01-09
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center Nankai University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
6th pandemic isolate  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Database
  
Genome Publications PloS one 3(12):e4053 A recalibrated molecular clock and independent origins for the cholera pandemic clones.
Other Publications
  
PROJECT COMPOSITION
Study Vibrio cholerae O395
Analysis Projects Vibrio cholerae sv. O1 O395
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
2-3, 6-8 kb  
Number Of Reads
334,497 (454-FLX), 14210 (ABI 3730)  
Read Size
  
Vector
pUC18  
GC Percent
48  
Chromosome Count
2  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000154
Organism Name
Vibrio cholerae sv. O1 O395  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
  
Species
Vibrio cholerae  
Subspecies
  
Species Synonyms
  
Strain
O395  
Strain Synonyms
  
Serovar-Biovar
O1  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 345073
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio cholerae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Curved-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
20 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Food poisoning
Cholera
Known Habitats Host
Fresh water
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph

 

 

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