PROJECT NAME
GOLD Project ID
Gp0004567  
Project Name
Syntrophothermus lipocalidus DSM 12680  
Other Names
  
Legacy ER Project ID
14459  
Legacy GOLD ID
Gi03960, Gc01292  
NCBI BioProject Name Syntrophothermus lipocalidus DSM 12680
NCBI BioProject ID 37873
NCBI BioProject Accession
PRJNA37873  
NCBI Locus Tag
Slip  
NCBI BioSample Accession
SAMN02598518  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-01-18 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Fatty acid-oxidizing bacteria  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 3(3):268-75 Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Syntrophothermus lipocalidus DSM 12680
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004567
Organism Name
Syntrophothermus lipocalidus DSM 12680  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Syntrophothermus  
Genus Synonyms
  
Species
Syntrophothermus lipocalidus  
Subspecies
  
Species Synonyms
  
Strain
DSM 12680  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 12680  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4497  
Exemplar Name
Syntrophothermus lipocalidus  
Taxon DOI
10.1601/tx.4497  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 643648
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Syntrophomonadaceae  
NCBI Genus
Syntrophothermus  
NCBI Species
Syntrophothermus lipocalidus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB021305
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
55  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Exosymbiotic  
Symbiotic Relationship
Syntrophic  
Symbiont Name
methanogens  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Bioreactor
Sludge
Metabolisms Syntrophic
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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