PROJECT NAME
GOLD Project ID
Gp0004533  
Project Name
Kingella oralis UB-38, ATCC 51147  
Other Names
  
Legacy ER Project ID
14264  
Legacy GOLD ID
Gi03745  
NCBI BioProject Name Kingella oralis ATCC 51147
NCBI BioProject ID 33145
NCBI BioProject Accession
PRJNA33145  
NCBI Locus Tag
GCWU000324  
NCBI BioSample Accession
SAMN00008832  
PI Weinstock, G
Added By Heather Creasy on 2008-12-30
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Kingella oralis ATCC 51147 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Kingella oralis UB-38, ATCC 51147
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004533
Organism Name
Kingella oralis UB-38, ATCC 51147  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Kingella  
Genus Synonyms
  
Species
Kingella oralis  
Subspecies
  
Species Synonyms
  
Strain
UB-38, ATCC 51147  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 51147  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1971  
Exemplar Name
Kingella oralis  
Taxon DOI
10.1601/tx.1971  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 629741
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Neisseriales  
NCBI Family
Neisseriaceae  
NCBI Genus
Kingella  
NCBI Species
Kingella oralis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L06164
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
477  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Periodontal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Dewhirst/Izard  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-10-23  
Date Sequencing Begins
2009-01-30  
Date Draft Sequencing Completed
2009-03-19  
Cross Reference ID
HOMD: tax_706  

 

 

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