| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0004524
|
|
Project Name
|
Bifidobacterium longum infantis JCM 1222
|
|
Other Names
|
|
|
Legacy ER Project ID
|
14616
|
|
Legacy GOLD ID
|
Gi04115, Gc01613
|
| NCBI BioProject Name | Bifidobacterium longum subsp. infantis ATCC 15697 |
|
NCBI BioProject ID
|
32049 |
|
NCBI BioProject Accession
|
PRJDA32049 |
|
NCBI Locus Tag
|
BLIJ
|
|
NCBI BioSample Accession
|
|
| PI | Hattori M |
| Added By |
Heather Creasy
on 2009-02-22 |
| Last Modified By |
JGI automated process
on 2014-05-20 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Human Microbiome Project (HMP) Food industry Medical |
|
Sequencing Center
|
University of Tokyo
(Japan)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
This strain will be used for comparative genome analysis
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
Nature
469(7331):543-7
Bifidobacteria can protect from enteropathogenic infection through production of acetate.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Human Microbiome Project (HMP) Reference Genomes |
| Analysis Projects |
Bifidobacterium longum infantis JCM 1222 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
60
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0004524 |
| Organism Name |
Bifidobacterium longum infantis JCM 1222
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Bifidobacterium
|
| Genus Synonyms |
|
| Species |
Bifidobacterium longum
|
| Subspecies |
infantis
|
| Species Synonyms |
|
| Strain |
JCM 1222
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
JCM 1222
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.7695
|
| Exemplar Name |
Bifidobacterium longum infantis
|
| Taxon DOI |
10.1601/tx.13003
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
391904 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Actinobacteria
|
| NCBI Order |
Bifidobacteriales
|
| NCBI Family |
Bifidobacteriaceae
|
| NCBI Genus |
Bifidobacterium
|
| NCBI Species |
Bifidobacterium longum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
5488 |
| Genbank 16S ID |
D86184 |
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Pairs Clusters |
| Diseases |
None |
| Known Habitats |
Intestinal tract Host Gastrointestinal tract Human fecal Feces Human |
| Metabolisms |
|
| Phenotypes |
Commensal Non-Pathogen Probiotic |
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
| HMP METADATA | |
|---|---|
| HMP ID |
919
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Gastrointestinal tract
|
| HMP Isolation Body Sample Subsite |
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
|
| Project Comments |
|
| DNA Received |
|
| Date DNA Received |
|
| Date Sequencing Begins |
|
| Date Draft Sequencing Completed |
|
| Cross Reference ID |
|
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