PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0004524
|
Project Name
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Bifidobacterium longum infantis JCM 1222
|
Other Names
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|
Legacy ER Project ID
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14616
|
Legacy GOLD ID
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Gi04115, Gc01613
|
NCBI BioProject Name | Bifidobacterium longum subsp. infantis ATCC 15697 |
NCBI BioProject ID
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32049 |
NCBI BioProject Accession
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PRJDA32049 |
NCBI Locus Tag
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BLIJ
|
NCBI BioSample Accession
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|
PI | Hattori M |
Added By |
Heather Creasy
on 2009-02-22 |
Last Modified By |
JGI automated process
on 2014-05-20 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Human Microbiome Project (HMP) Food industry Medical |
Sequencing Center
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University of Tokyo
(Japan)
|
Collaborating Institute
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|
Funding Agency
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|
Project Description
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This strain will be used for comparative genome analysis
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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|
Database
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|
Genome Publications
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Nature
469(7331):543-7
Bifidobacteria can protect from enteropathogenic infection through production of acetate.
|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
Human Microbiome Project (HMP) Reference Genomes |
Organism |
Bifidobacterium longum infantis JCM 1222 |
Analysis Projects |
Bifidobacterium longum infantis JCM 1222 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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Sanger |
Library Method
(MIGS-28)
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|
Number Of Reads
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|
Read Size
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|
Vector
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|
GC Percent |
60
|
Chromosome Count |
|
Plasmid Count |
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0004524 |
Organism Name |
Bifidobacterium longum infantis JCM 1222
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
ACTINOBACTERIA
|
Genus |
Bifidobacterium
|
Genus Synonyms |
|
Species |
Bifidobacterium longum
|
Subspecies |
infantis
|
Species Synonyms |
|
Strain |
JCM 1222
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
JCM 1222
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.7695
|
Exemplar Name |
Bifidobacterium infantis
|
Taxon DOI |
10.1601/tx.7695
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
391904 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Actinobacteria
|
NCBI Class |
Actinobacteria
|
NCBI Order |
Bifidobacteriales
|
NCBI Family |
Bifidobacteriaceae
|
NCBI Genus |
Bifidobacterium
|
NCBI Species |
Bifidobacterium longum
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Human
|
Ecosystem Type |
Digestive system
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
5488 |
Genbank 16S ID |
D86184 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Nonmotile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram+
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
Singles Pairs Clusters |
Diseases |
None |
Known Habitats |
Intestinal tract Host Gastrointestinal tract Human fecal Feces Human |
Metabolisms |
|
Phenotypes |
Commensal Non-Pathogen Probiotic |
Energy Sources |
|
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
|
Position Of Heterocysts |
|
Cysts |
|
Mode Of Reproduction |
|
Trichome |
|
Trichome Type |
|
Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
|
Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
|
Secondary Metabolites |
|
Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
|
Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
HMP METADATA | |
---|---|
HMP ID |
919
|
Show in DACC? |
Yes
|
HMP Project Status |
Complete
|
BEI Status |
|
NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
Isolate Suggestion Source |
|
HMP Isolation Body Sample Site |
Gastrointestinal tract
|
HMP Isolation Body Sample Subsite |
|
HMP Finishing Goal |
|
Source, Sample & Medical Relevance Comments |
|
Isolate Availability Comments |
|
Project Comments |
|
DNA Received |
|
Date DNA Received |
|
Date Sequencing Begins |
|
Date Draft Sequencing Completed |
|
Cross Reference ID |
|
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