PROJECT INFORMATION
GOLD Project ID
Gp0004453  
Project Name
Clostridioides difficile R20291  
Other Names
Clostridium difficile R20291  
Legacy ER Project ID
14490  
Legacy GOLD ID
Gi03989, Gc01121  
NCBI BioProject Name Clostridium difficile R20291
NCBI BioProject ID 38039
NCBI BioProject Accession PRJNA38039
NCBI Locus Tag
CDR20291  
NCBI BioSample Accession SAMEA3138243
PI Brendan W Wren
Added By Nikos Kyrpides on 2009-01-23
Last Modified By Alejandro Rodriguez Mojica on 2018-07-27
Project Comments
  
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Swine Pathogen
Human Pathogen
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
Clostridium difficile R20291 genome sequencing project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Wikipedia
Entrez
Database
  
Genome Publications Genome biology 10(9):R102 Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium.
Other Publications
  
PROJECT COMPOSITION
Study Clostridium difficile R20291
Analysis Projects Clostridioides difficile R20291
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS20
Library Method (MIGS-28)
  
Number Of Reads
34018  
Read Size
  
Vector
  
GC Percent
29  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004453
Organism Name
Clostridioides difficile R20291  
Other names (alias, synonyms, short names, common names)
Clostridium difficile R20291  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridioides  
Genus Synonyms
Clostridium  
Species
Clostridioides difficile  
Subspecies
  
Species Synonyms
  
Strain
R20291  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 645463
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Peptostreptococcaceae  
NCBI Genus
Clostridioides  
NCBI Species
Clostridioides difficile  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Built environment  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Chains
Diseases Colitis
Diarrhea
Peritonitis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

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