PROJECT INFORMATION
GOLD Project ID
Gp0004422  
Project Name
Methylovorus glucosetrophus SIP3-4  
Other Names
  
Legacy ER Project ID
14455  
Legacy GOLD ID
Gi03952, Gc01057  
NCBI BioProject Name Methylovorus sp. SIP3-4
NCBI BioProject ID 33241
NCBI BioProject Accession PRJNA33241
NCBI Locus Tag
Msip34  
NCBI BioSample Accession SAMN02598498
PI Ludmila Chistoserdova
Added By Nikos Kyrpides on 2009-01-18
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methylamine-degrading organism  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(15):3757-64 Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae.
Other Publications
  
PROJECT COMPOSITION
Study CSP_300136_795817
Analysis Projects Methylovorus glucosetrophus SIP3-4
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
55  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0004422
Organism Name
Methylovorus glucosetrophus SIP3-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Methylovorus  
Genus Synonyms
  
Species
Methylovorus glucosetrophus  
Subspecies
  
Species Synonyms
  
Strain
SIP3-4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 582744
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Nitrosomonadales  
NCBI Family
Methylophilaceae  
NCBI Genus
Methylovorus  
NCBI Species
Methylovorus glucosotrophus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sediment
Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Methylotroph

 

 

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