PROJECT NAME
GOLD Project ID
Gp0004407  
Project Name
Bacteroides coprosuis PC 139, DSM 18011  
Other Names
  
Legacy ER Project ID
14474  
Legacy GOLD ID
Gi03975  
NCBI BioProject Name Bacteroides coprosuis DSM 18011
NCBI BioProject ID 40779
NCBI BioProject Accession
PRJNA40779  
NCBI Locus Tag
Bcop  
NCBI BioSample Accession
SAMN02256469  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-01-22
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Bacteroides coprosuis DSM 18011 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Isolation
Database
  
Genome Publications Standards in genomic sciences 4(2):233-43 Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Bacteroides coprosuis PC 139, DSM 18011
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
35  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004407
Organism Name
Bacteroides coprosuis PC 139, DSM 18011  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Bacteroides  
Genus Synonyms
  
Species
Bacteroides coprosuis  
Subspecies
  
Species Synonyms
  
Strain
PC 139, DSM 18011  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 18011  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9759  
Exemplar Name
Bacteroides coprosuis  
Taxon DOI
10.1601/tx.9759  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 679937
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Bacteroidaceae  
NCBI Genus
Bacteroides  
NCBI Species
Bacteroides coprosuis  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Solid waste  
Ecosystem Type
Solid animal waste  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF319778
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Pig
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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