PROJECT NAME
GOLD Project ID
Gp0004377  
Project Name
Desulfotomaculum nigrificans DSM 574  
Other Names
  
Legacy ER Project ID
14439  
Legacy GOLD ID
Gi03933  
NCBI BioProject Name Desulfotomaculum nigrificans DSM 574
NCBI BioProject ID 46699
NCBI BioProject Accession
PRJNA46699  
NCBI Locus Tag
Desni  
NCBI BioSample Accession
SAMN02441786  
PI Alfons Stams
Added By Nikos Kyrpides on 2009-01-17
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Desulfotomaculum nigrificans DSM 574 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies CSP_300132_795700
Analysis Projects Desulfotomaculum nigrificans DSM 574
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004377
Organism Name
Desulfotomaculum nigrificans DSM 574  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Desulfotomaculum  
Genus Synonyms
  
Species
Desulfotomaculum nigrificans  
Subspecies
  
Species Synonyms
  
Strain
DSM 574  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 574  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4330  
Exemplar Name
Desulfotomaculum nigrificans  
Taxon DOI
10.1601/tx.4330  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 696369
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Peptococcaceae  
NCBI Genus
Desulfotomaculum  
NCBI Species
Desulfotomaculum nigrificans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Animal gastrointestinal tract
Aquatic
Fresh water
Mud
Sea water
Soil
Metabolisms Hydrogen sulfide gas release
Sulfate reducer
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?