PROJECT INFORMATION
GOLD Project ID
Gp0004377  
Project Name
Desulfotomaculum nigrificans DSM 574  
Other Names
  
Legacy ER Project ID
14439  
Legacy GOLD ID
Gi03933  
NCBI BioProject Name Desulfotomaculum nigrificans DSM 574
NCBI BioProject Accession PRJNA46699
NCBI Locus Tag
Desni  
NCBI BioSample Accession SAMN02441786
PI Alfons Stams
Added By Nikos Kyrpides on 2009-01-17
Last Modified By Hema Katta on 2018-12-19
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Desulfotomaculum nigrificans DSM 574 genome sequencing project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
JGI Portal Download Raw Sequence Data
Genome Publications Standards in genomic sciences 9(3):655-75 Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study CSP_300132_795700
Organism Desulfotomaculum nigrificans DSM 574
Analysis Projects Desulfotomaculum nigrificans DSM 574
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
454
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004377
Organism Name
Desulfotomaculum nigrificans DSM 574  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Desulfotomaculum  
Genus Synonyms
  
Species
Desulfotomaculum nigrificans  
Subspecies
  
Species Synonyms
  
Strain
DSM 574  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 574  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4330  
Exemplar Name
Desulfotomaculum nigrificans  
Taxon DOI
10.1601/tx.4330  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 696369
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Peptococcaceae  
NCBI Genus
Desulfotomaculum  
NCBI Species
Desulfotomaculum nigrificans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID HG005352
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Mud
Soil
Sea water
Fresh water
Animal gastrointestinal tract
Metabolisms Sulfate reducer
Hydrogen sulfide gas release
Phenotypes
  
Energy Sources
  

 

 

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