PROJECT NAME
GOLD Project ID
Gp0004369  
Project Name
Alicycliphilus denitrificans K601  
Other Names
  
Legacy ER Project ID
14427  
Legacy GOLD ID
Gi03920, Gc01734  
NCBI BioProject Name Alicycliphilus denitrificans K601
NCBI BioProject ID 50751
NCBI BioProject Accession
PRJNA50751  
NCBI Locus Tag
Alide2  
NCBI BioSample Accession
SAMN00713606  
PI Alfons Stams
Added By Nikos Kyrpides on 2009-01-17
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Alicycliphilus denitrificans K601 genome sequencing project.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications Journal of bacteriology 193(18):5028-9 Genome sequences of Alicycliphilus denitrificans strains BC and K601T.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies CSP_300158_796595
Analysis Projects Alicycliphilus denitrificans K601
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0004369
Organism Name
Alicycliphilus denitrificans K601  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Alicycliphilus  
Genus Synonyms
  
Species
Alicycliphilus denitrificans  
Subspecies
  
Species Synonyms
  
Strain
K601  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 14773  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1795  
Exemplar Name
Alicycliphilus denitrificans  
Taxon DOI
10.1601/tx.1795  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 596154
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Alicycliphilus  
NCBI Species
Alicycliphilus denitrificans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
30C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Sludge
Wastewater
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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