PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0004364
|
Project Name
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Syntrophobotulus glycolicus FlGlyR, DSM 8271
|
Other Names
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|
Legacy ER Project ID
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294
|
Legacy GOLD ID
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Gi03959, Gc01670
|
NCBI BioProject Name | Syntrophobotulus glycolicus DSM 8271 |
NCBI BioProject ID
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38111 |
NCBI BioProject Accession
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PRJNA38111 |
NCBI Locus Tag
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Sgly
|
NCBI BioSample Accession
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SAMN00216969 |
PI | Jonathan Eisen |
Added By |
Nikos Kyrpides
on 2009-01-18 |
Last Modified By |
Jon Bertsch
on 2014-04-08 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Tree of Life GEBA |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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Leibniz Institute
(Germany)
|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
Project Description
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Syntrophobotulus glycolicus DSM 8271 Genome sequencing
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
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Information |
Database
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|
Genome Publications
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Standards in genomic sciences
4(3):371-80
Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).
|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
A Genomic Encyclopedia of Bacteria and Archaea (GEBA) |
Organism |
Syntrophobotulus glycolicus FlGlyR, DSM 8271 |
Analysis Projects |
Syntrophobotulus glycolicus FlGlyR, DSM 8271 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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Illumina GAIIx 454 GS FLX Titanium |
Library Method
(MIGS-28)
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|
Number Of Reads
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|
Read Size
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|
Vector
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|
GC Percent |
46
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0004364 |
Organism Name |
Syntrophobotulus glycolicus FlGlyR, DSM 8271
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
FIRMICUTES
|
Genus |
Syntrophobotulus
|
Genus Synonyms |
|
Species |
Syntrophobotulus glycolicus
|
Subspecies |
|
Species Synonyms |
|
Strain |
FlGlyR, DSM 8271
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
DSM 8271
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.4355
|
Exemplar Name |
Syntrophobotulus glycolicus
|
Taxon DOI |
10.1601/tx.4355
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
645991 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Firmicutes
|
NCBI Class |
Clostridia
|
NCBI Order |
Clostridiales
|
NCBI Family |
Peptococcaceae
|
NCBI Genus |
Syntrophobotulus
|
NCBI Species |
Syntrophobotulus glycolicus
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Engineered
|
Ecosystem Category |
Wastewater
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
X99706 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Anaerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Nonmotile
|
Sporulation |
Sporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
28
|
Salinity |
|
pH |
|
Cell Diameter |
0.5 um
|
Cell Length |
2.5 - 3.5 um
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Symbiotic |
Symbiotic Physical Interaction |
Exosymbiotic
|
Symbiotic Relationship |
Syntrophic
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
|
Known Habitats |
Sludge Wastewater |
Metabolisms |
|
Phenotypes |
|
Energy Sources |
Chemotroph |
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
|
Position Of Heterocysts |
|
Cysts |
|
Mode Of Reproduction |
|
Trichome |
|
Trichome Type |
|
Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
|
Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
|
Secondary Metabolites |
|
Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
|
Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
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