PROJECT NAME
GOLD Project ID
Gp0004335  
Project Name
Bacteroides xylanisolvens XB1A  
Other Names
  
Legacy ER Project ID
14582  
Legacy GOLD ID
Gi04080, Gc01458  
NCBI BioProject Name Bacteroides xylanisolvens XB1A
NCBI BioProject ID 39177
NCBI BioProject Accession
PRJNA39177  
NCBI Locus Tag
BXY  
NCBI BioSample Accession
  
PI Turner K
Added By Heather Creasy on 2009-02-14
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency European Union (EU) (European Union)
Project Description
Bacteroides xylanisolvens XB1A genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Bacteroides xylanisolvens XB1A
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004335
Organism Name
Bacteroides xylanisolvens XB1A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Bacteroides  
Genus Synonyms
  
Species
Bacteroides xylanisolvens  
Subspecies
  
Species Synonyms
  
Strain
XB1A  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 18836  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13240  
Exemplar Name
Bacteroides xylanisolvens  
Taxon DOI
10.1601/tx.13240  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 657309
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Bacteroidaceae  
NCBI Genus
Bacteroides  
NCBI Species
Bacteroides xylanisolvens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AM230650
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Feces
Gastrointestinal tract
Host
Metabolisms Xylan degrader
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
911  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
  

 

 

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