PROJECT INFORMATION
GOLD Project ID
Gp0004333  
Project Name
Lachnoclostridium cf. saccharolyticum K10  
Other Names
  
Legacy ER Project ID
14580  
Legacy GOLD ID
Gi04078, Gc01475  
NCBI BioProject Name Clostridium cf. saccharolyticum K10
NCBI BioProject ID 45855
NCBI BioProject Accession PRJEA45855
NCBI Locus Tag
CLS  
NCBI BioSample Accession
PI Turner K
Added By Heather Creasy on 2009-02-14
Last Modified By Supratim Mukherjee on 2018-06-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency European Union (EU) (European Union)
Project Description
Clostridium cf. saccharolyticum K10 genome sequencing project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Lachnoclostridium cf. saccharolyticum K10
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004333
Organism Name
Lachnoclostridium cf. saccharolyticum K10  
Other names (alias, synonyms, short names, common names)
Clostridium cf. saccharolyticum K10  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lachnoclostridium  
Genus Synonyms
Clostridium  
Species
Lachnoclostridium cf. saccharolyticum  
Subspecies
  
Species Synonyms
  
Strain
K10  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 717608
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Lachnospiraceae  
NCBI Genus
Lachnoclostridium  
NCBI Species
[Clostridium] saccharolyticum  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab synthesis  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Chains
Diseases Botulism
Known Habitats Marine
Host
Food
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph
HMP METADATA
HMP ID
931  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
Gut  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
  

 

 

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