PROJECT INFORMATION | |
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GOLD Project ID
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Gp0004333
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Project Name
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Lachnoclostridium cf. saccharolyticum K10
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Other Names
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Legacy ER Project ID
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14580
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Legacy GOLD ID
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Gi04078, Gc01475
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NCBI BioProject Name | Clostridium cf. saccharolyticum K10 |
NCBI BioProject Accession
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PRJEA45855 |
NCBI Locus Tag
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CLS
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NCBI BioSample Accession
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Source Sample ID
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PI | Turner K |
Added By | Heather Creasy on 2009-02-14 |
Last Modified By | Supratim Mukherjee on 2018-06-05 |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Human Microbiome Project (HMP) Medical |
Sequencing Center
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Wellcome Trust Sanger Institute
(United Kingdom)
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Collaborating Institute
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Funding Agency
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European Union (EU)
(European Union)
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Project Description
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Clostridium cf. saccharolyticum K10 genome sequencing project
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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Applied and environmental microbiology: 74(12):3915-7 Transfer of conjugative elements from rumen and human Firmicutes bacteria to Roseburia inulinivorans. PubMed: 18456856 DOI: 10.1128/AEM.02807-07 Antimicrobial agents and chemotherapy: 45(11):3246-9 Novel tetracycline resistance gene, tet(32), in the Clostridium-related human colonic anaerobe K10 and its transmission in vitro to the rumen anaerobe Butyrivibrio fibrisolvens. PubMed: 11600392 Show more publications...
Antimicrobial agents and chemotherapy: 50(8):2632-9 Comparative analysis of sequences flanking tet(W) resistance genes in multiple species of gut bacteria.
PubMed: 16870752 |
SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Human Microbiome Project (HMP) Reference Genomes |
Organism |
Lachnoclostridium cf. saccharolyticum K10 |
Analysis Projects |
Lachnoclostridium cf. saccharolyticum K10 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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454 |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
50
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Chromosome Count |
1
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Plasmid Count |
0
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ORGANISM NAME | |
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GOLD Organism ID |
Go0004333 |
Organism Name |
Lachnoclostridium cf. saccharolyticum K10
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Other names (alias, synonyms, short names, common names) |
Clostridium cf. saccharolyticum K10
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Organism Domain |
BACTERIAL
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Phylogeny |
FIRMICUTES
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Genus |
Lachnoclostridium
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Genus Synonyms |
Clostridium
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Species |
Lachnoclostridium cf. saccharolyticum
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Subspecies |
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Species Synonyms |
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Strain |
K10
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
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Type Strain |
Unknown
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Exemplar DOI |
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Exemplar Name |
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Taxon DOI |
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
717608 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Firmicutes
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NCBI Class |
Clostridia
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NCBI Order |
Eubacteriales
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NCBI Family |
Lachnospiraceae
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NCBI Genus |
Lacrimispora
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NCBI Species |
Lacrimispora saccharolytica
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ISOLATION CLASSIFICATION | |
Ecosystem |
Engineered
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Ecosystem Category |
Lab synthesis
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Ecosystem Type |
Unclassified
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Ecosystem Subtype |
Unclassified
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Specific Ecosystem |
Unclassified
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
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Cell Shape |
Rod-shaped
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Motility |
Motile
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Sporulation |
Sporulating
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Temperature Range |
Mesophile
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram+
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Biotic Relationships | Free living |
Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
Singles Pairs Chains |
Diseases |
Botulism |
Known Habitats |
Marine Host Food |
Metabolisms |
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Phenotypes |
Pathogen |
Energy Sources |
Chemoorganotroph |
HMP METADATA | |
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HMP ID |
931
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Show in DACC? |
Yes
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HMP Project Status |
Complete
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BEI Status |
|
NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
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Isolate Suggestion Source |
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HMP Isolation Body Sample Site |
Gastrointestinal tract
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HMP Isolation Body Sample Subsite |
Gut
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HMP Finishing Goal |
|
Source, Sample & Medical Relevance Comments |
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Isolate Availability Comments |
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Project Comments |
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DNA Received |
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Date DNA Received |
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Date Sequencing Begins |
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Date Draft Sequencing Completed |
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Cross Reference ID |
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