PROJECT NAME
GOLD Project ID
Gp0004324  
Project Name
Escherichia coli IAI39  
Other Names
  
Legacy ER Project ID
14382  
Legacy GOLD ID
Gc00923  
NCBI BioProject Name Escherichia coli IAI39
NCBI BioProject ID 33411
NCBI BioProject Accession PRJNA33411
NCBI Locus Tag
ECIAI39  
NCBI BioSample Accession SAMEA3138234
PI Barbe V
Added By Nikos Kyrpides on 2009-01-12
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Comparative analysis
Human Pathogen
Medical
Sequencing Center CEA Genoscope (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Urinary tract infection isolate  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Entrez
Taxonomy
Database
  
Genome Publications PLoS genetics 5(1):e1000344 Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.
Other Publications
  
PROJECT COMPOSITION
Study Escherichia coli genome sequencing - Genoscope
Analysis Projects Escherichia coli IAI39
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004324
Organism Name
Escherichia coli IAI39  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
Escherichia coli  
Subspecies
  
Species Synonyms
  
Strain
IAI39  
Strain Synonyms
  
Serovar-Biovar
O7:K1  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 585057
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia coli  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Urinary tract infection
Diarrhea
Known Habitats Human intestinal microflora
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph

 

 

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