PROJECT NAME
GOLD Project ID
Gp0004297  
Project Name
Capnocytophaga gingivalis ATCC 33624  
Other Names
  
Legacy ER Project ID
14184  
Legacy GOLD ID
Gi03661  
NCBI BioProject Name Capnocytophaga gingivalis ATCC 33624
NCBI BioProject ID 31387
NCBI BioProject Accession
PRJNA31387  
NCBI Locus Tag
CAPGI0001  
NCBI BioSample Accession
SAMN00001917  
PI Dodson R.
Added By Heather Creasy on 2008-12-15
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
HMP
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Capnocytophaga gingivalis ATCC 33624
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004297
Organism Name
Capnocytophaga gingivalis ATCC 33624  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Capnocytophaga  
Genus Synonyms
  
Species
Capnocytophaga gingivalis  
Subspecies
  
Species Synonyms
  
Strain
ATCC 33624  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33624  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8137  
Exemplar Name
Capnocytophaga gingivalis  
Taxon DOI
10.1601/tx.8137  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 553178
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Capnocytophaga  
NCBI Species
Capnocytophaga gingivalis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L14639
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Periodontitis
Known Habitats Gingival crevices
Host
Human oral cavity
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph
HMP METADATA
HMP ID
196  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-09-25  
Date Sequencing Begins
  
Date Draft Sequencing Completed
2008-11-13  
Cross Reference ID
HOMD: tax_337  

 

 

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