PROJECT INFORMATION
GOLD Project ID
Gp0004266  
Project Name
Shigella flexneri sv. Fxv 2002017  
Other Names
  
Legacy ER Project ID
14545  
Legacy GOLD ID
Gi04043, Gc01175  
NCBI BioProject Name Shigella flexneri 2002017
NCBI BioProject ID 33639
NCBI BioProject Accession PRJNA33639
NCBI Locus Tag
SFXV  
NCBI BioSample Accession SAMN02603122
PI Jianguo Xu
Added By Nikos Kyrpides on 2009-02-04
Last Modified By Alejandro Rodriguez Mojica on 2018-07-27
Project Comments
  
Project Status
Complete and Published  
Project Relevance Comparative analysis
Biothreat
Human Pathogen
Medical
Sequencing Center Nankai University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Strain for comparative analysis  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of clinical microbiology 48(2):419-26 Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri.
Other Publications
  
PROJECT COMPOSITION
Study Shigella flexneri 2002017
Analysis Projects Shigella flexneri sv. Fxv 2002017
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Sanger
Library Method (MIGS-28)
  
Number Of Reads
226995 (454-FLX)  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
5  
ORGANISM NAME
GOLD Organism ID Go0004266
Organism Name
Shigella flexneri sv. Fxv 2002017  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shigella  
Genus Synonyms
  
Species
Shigella flexneri  
Subspecies
  
Species Synonyms
  
Strain
2002017  
Strain Synonyms
  
Serovar-Biovar
Fxv  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 591020
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Shigella  
NCBI Species
Shigella flexneri  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Shigellosis
Dysenteria
Food poisoning
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

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