PROJECT INFORMATION | |
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GOLD Project ID
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Gp0004266
|
Project Name
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Shigella flexneri sv. Fxv 2002017
|
Other Names
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Legacy ER Project ID
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14545
|
Legacy GOLD ID
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Gi04043, Gc01175
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NCBI BioProject Name | Shigella flexneri 2002017 |
NCBI BioProject ID
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33639 |
NCBI BioProject Accession
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PRJNA33639 |
NCBI Locus Tag
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SFXV
|
NCBI BioSample Accession
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SAMN02603122 |
PI | Jianguo Xu |
Added By |
Nikos Kyrpides
on 2009-02-04 |
Last Modified By |
Alejandro Rodriguez Mojica
on 2018-07-27 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Comparative analysis Biothreat Human Pathogen Medical |
Sequencing Center
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Nankai University
(China)
|
Collaborating Institute
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|
Funding Agency
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|
Project Description
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Strain for comparative analysis
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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|
Database
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|
Genome Publications
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Journal of clinical microbiology
48(2):419-26
Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri.
|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
Shigella flexneri 2002017 |
Organism |
Shigella flexneri sv. Fxv 2002017 |
Analysis Projects |
Shigella flexneri sv. Fxv 2002017 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Sequencing Comments
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Sequencing Technology
(MIGS-29)
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454 GS FLX Sanger |
Library Method
(MIGS-28)
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|
Number Of Reads
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226995 (454-FLX)
|
Read Size
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Vector
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|
GC Percent |
51
|
Chromosome Count |
1
|
Plasmid Count |
5
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0004266 |
Organism Name |
Shigella flexneri sv. Fxv 2002017
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-GAMMA
|
Genus |
Shigella
|
Genus Synonyms |
|
Species |
Shigella flexneri
|
Subspecies |
|
Species Synonyms |
|
Strain |
2002017
|
Strain Synonyms |
|
Serovar-Biovar |
Fxv
|
Culture Collection ID |
|
Type Strain |
Unknown
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
591020 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Gammaproteobacteria
|
NCBI Order |
Enterobacterales
|
NCBI Family |
Enterobacteriaceae
|
NCBI Genus |
Shigella
|
NCBI Species |
Shigella flexneri
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Human
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
|
GENERAL PROPERTIES | |
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Oxygen Requirement |
Facultative
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
37
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
Singles Pairs |
Diseases |
Shigellosis Dysenteria Food poisoning |
Known Habitats |
Host |
Metabolisms |
|
Phenotypes |
Pathogen |
Energy Sources |
Chemoorganotroph |
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