PROJECT INFORMATION | |
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GOLD Project ID
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Gp0004235
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Project Name
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Candidatus Liberibacter asiaticus psy62
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Other Names
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Legacy ER Project ID
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14067
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Legacy GOLD ID
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Gi03541, Gc01081
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NCBI BioProject Name | Candidatus Liberibacter asiaticus str. psy62 |
NCBI BioProject Accession
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PRJNA29835 |
NCBI Locus Tag
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CLIBASIA
|
NCBI BioSample Accession
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SAMN02603311 |
PI | Yongping Duan |
Added By |
Nikos Kyrpides
on 2008-10-25 |
Last Modified By |
Jon Bertsch
on 2014-04-08 |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Plant Pathogen Agricultural |
Sequencing Center
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Baylor College of Medicine
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Collaborating Institute
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University of Florida
(USA)
|
Funding Agency
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U.S. Department of Agriculture
(France)
|
Project Description
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Causative agent of huanglongbing (citrus greening disease)
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Molecular plant-microbe interactions : MPMI
22(8):1011-20
Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics.
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Other Publications
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|
Ignored Publications
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|
Unassigned Publications
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Applied and environmental microbiology
77(18):6663-73
Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats.
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Candidatus Liberibacter asiaticus psy62 |
Organism |
Candidatus Liberibacter asiaticus psy62 |
Analysis Projects |
Candidatus Liberibacter asiaticus psy62 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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|
Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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|
Sequencing Technology
(MIGS-29)
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454 GS FLX |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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91,875
|
Read Size
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Vector
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|
GC Percent |
36
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0004235 |
Organism Name |
Candidatus Liberibacter asiaticus psy62
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-ALPHA
|
Genus |
|
Genus Synonyms |
|
Species |
Candidatus Liberibacter asiaticus psy62
|
Subspecies |
|
Species Synonyms |
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Strain |
psy62
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
|
Type Strain |
Unknown
|
Exemplar DOI |
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Exemplar Name |
|
Taxon DOI |
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
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ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
537021 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Alphaproteobacteria
|
NCBI Order |
Hyphomicrobiales
|
NCBI Family |
Rhizobiaceae
|
NCBI Genus |
Liberibacter
|
NCBI Species |
Candidatus Liberibacter asiaticus
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Arthropoda: Insects
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
|
Temperature Range |
Mesophile
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram-
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
Huanglongbing |
Known Habitats |
Host |
Metabolisms |
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Phenotypes |
Pathogen |
Energy Sources |
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