PROJECT NAME
GOLD Project ID
Gp0004161  
Project Name
Peptoniphilus sp. F0131  
Other Names
  
Legacy ER Project ID
13948  
Legacy GOLD ID
Gi03429  
NCBI BioProject Name Peptoniphilus sp. oral taxon 386 str. F0131
NCBI BioProject ID 41969
NCBI BioProject Accession
PRJNA41969  
NCBI Locus Tag
HMPREF0629  
NCBI BioSample Accession
SAMN02463827  
PI Birren B
Added By Heather Creasy on 2008-09-14
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Peptoniphilus sp. F0131
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
356228  
Read Size
  
Vector
  
GC Percent
31  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004161
Organism Name
Peptoniphilus sp. F0131  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Peptoniphilus  
Genus Synonyms
  
Species
Peptoniphilus sp. oral taxon 386  
Subspecies
  
Species Synonyms
  
Strain
F0131  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-6  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 575609
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Tissierellia  
NCBI Order
Tissierellales  
NCBI Family
Peptoniphilaceae  
NCBI Genus
Peptoniphilus  
NCBI Species
Peptoniphilus sp. oral taxon 386  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  
HMP METADATA
HMP ID
629  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2009-03-10  
Date Sequencing Begins
2009-03-10  
Date Draft Sequencing Completed
2009-07-04  
Cross Reference ID
HOMD: tax_386  

 

 

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