PROJECT NAME
GOLD Project ID
Gp0004155  
Project Name
Leptospira biflexa sv. Patoc Patoc 1 (Paris)  
Other Names
  
Legacy ER Project ID
13900  
Legacy GOLD ID
Gc00858  
NCBI BioProject Name Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'
NCBI BioProject ID 20133
NCBI BioProject Accession
PRJNA20133  
NCBI Locus Tag
LEPBI  
NCBI BioSample Accession
SAMN02603347  
PI Adler B
Added By Nikos Kyrpides on 2008-09-13
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Medical
Sequencing Center Institut Pasteur (France)
Collaborating Institute Monash University (Australia)
Funding Agency
  
Project Description
Type strain for the species  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Leptospirosis
Entrez
Taxonomy
Database
  
Genome Publications PloS one 3(2):e1607 Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Leptospira biflexa Patoc 1 (Paris)
Analysis Projects Leptospira biflexa sv. Patoc Patoc 1 (Paris)
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
2  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0004155
Organism Name
Leptospira biflexa sv. Patoc Patoc 1 (Paris)  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Leptospira  
Genus Synonyms
  
Species
Leptospira biflexa  
Subspecies
  
Species Synonyms
  
Strain
Patoc 1 (Paris)  
Strain Synonyms
  
Serovar-Biovar
Patoc  
Culture Collection ID
ATCC 23582  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7896  
Exemplar Name
Leptospira biflexa  
Taxon DOI
10.1601/tx.7896  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 456481
NCBI Kingdom
  
NCBI Phylum
Spirochaetes  
NCBI Class
Spirochaetia  
NCBI Order
  
NCBI Family
Leptospiraceae  
NCBI Genus
Leptospira  
NCBI Species
Leptospira biflexa  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 102853
Genbank 16S ID Z12821
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Leptospirosis
Known Habitats Aquatic
Fresh water
Host
Soil
Metabolisms
  
Phenotypes Saprophyte
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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