PROJECT NAME
GOLD Project ID
Gp0004126  
Project Name
Rothia mucilaginosa ATCC 25296  
Other Names
  
Legacy ER Project ID
14021  
Legacy GOLD ID
Gi03493  
NCBI BioProject Name Rothia mucilaginosa ATCC 25296
NCBI BioProject ID 31405
NCBI BioProject Accession
PRJNA31405  
NCBI Locus Tag
ROTMU0001  
NCBI BioSample Accession
SAMN00001919  
PI Dodson R.
Added By Heather Creasy on 2008-10-05
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Rothia mucilaginosa ATCC 25296
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004126
Organism Name
Rothia mucilaginosa ATCC 25296  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Rothia  
Genus Synonyms
  
Species
Rothia mucilaginosa  
Subspecies
  
Species Synonyms
  
Strain
ATCC 25296  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 25296  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5905  
Exemplar Name
Rothia mucilaginosa  
Taxon DOI
10.1601/tx.5902  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 553201
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Micrococcaceae  
NCBI Genus
Rothia  
NCBI Species
Rothia mucilaginosa  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Endocarditis
Meningitis
Opportunistic infection
Periodontitis
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes Opportunistic Pathogen
Energy Sources
  
HMP METADATA
HMP ID
736  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Airways  
HMP Isolation Body Sample Subsite
Pharyngeal mucosa  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-03-25  
Date Sequencing Begins
  
Date Draft Sequencing Completed
2008-10-20  
Cross Reference ID
HOMD: tax_681  

 

 

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