PROJECT INFORMATION
GOLD Project ID
Gp0004082  
Project Name
Laribacter hongkongensis HLHK9  
Other Names
  
Legacy ER Project ID
177  
Legacy GOLD ID
Gi03363, Gc00966  
NCBI BioProject Name Laribacter hongkongensis HLHK9
NCBI BioProject ID 30817
NCBI BioProject Accession PRJNA30817
NCBI Locus Tag
LHK  
NCBI BioSample Accession SAMN02603956
PI KY Yuen
Added By Nikos Kyrpides on 2008-09-06
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Comparative analysis
Human Pathogen
Medical
Sequencing Center University of Hong Kong (Hong Kong)
Collaborating Institute University of Hong Kong (Hong Kong)
Funding Agency
  
Project Description
Clinical isolate  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Isolation
Entrez
Taxonomy
Database
  
Genome Publications PLoS genetics 5(3):e1000416 The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats.
Other Publications
  
PROJECT COMPOSITION
Study Laribacter hongkongensis HLHK9
Analysis Projects Laribacter hongkongensis HLHK9
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
24Kb, 5-6Kb, 3545Kb  
Number Of Reads
  
Read Size
  
Vector
pcDNA2.1, pCC2FOS  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004082
Organism Name
Laribacter hongkongensis HLHK9  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Laribacter  
Genus Synonyms
  
Species
Laribacter hongkongensis  
Subspecies
  
Species Synonyms
  
Strain
HLHK9  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 557598
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Neisseriales  
NCBI Family
Chromobacteriaceae  
NCBI Genus
Laribacter  
NCBI Species
Laribacter hongkongensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
Blood  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Gastroenteritis
Opportunistic infection
Known Habitats Host
Fish
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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