PROJECT INFORMATION
GOLD Project ID
Gp0004062  
Project Name
Acidaminococcus intestini RyC-MR95  
Other Names
  
Legacy ER Project ID
14080  
Legacy GOLD ID
Gi03548, Gc01987  
NCBI BioProject Name Acidaminococcus intestini RYC-MR95
NCBI BioProject Accession PRJNA32215
NCBI Locus Tag
ACIN  
NCBI BioSample Accession
PI D'Auria G
Added By Nikos Kyrpides on 2008-11-01
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Association Nationale Recherche Technologie (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Clinical strain from a perianal abscess  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Journal of bacteriology 193(24):7008-9 Complete genome sequence of Acidaminococcus intestini RYC-MR95, a Gram-negative bacterium from the phylum Firmicutes.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Acidaminococcus intestini RyC-MR95
Organism Acidaminococcus intestini RyC-MR95
Analysis Projects Acidaminococcus intestini RyC-MR95
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004062
Organism Name
Acidaminococcus intestini RyC-MR95  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Acidaminococcus  
Genus Synonyms
  
Species
Acidaminococcus intestini  
Subspecies
  
Species Synonyms
  
Strain
RYC-MR95  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 568816
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Acidaminococcales  
NCBI Family
Acidaminococcaceae  
NCBI Genus
Acidaminococcus  
NCBI Species
Acidaminococcus intestini  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Anorectal abscess  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Opportunistic infection
Known Habitats Human intestinal microflora
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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