PROJECT NAME
GOLD Project ID
Gp0004062  
Project Name
Acidaminococcus intestini RyC-MR95  
Other Names
  
Legacy ER Project ID
14080  
Legacy GOLD ID
Gi03548, Gc01987  
NCBI BioProject Name Acidaminococcus intestini RYC-MR95
NCBI BioProject ID 32215
NCBI BioProject Accession
PRJNA32215  
NCBI Locus Tag
ACIN  
NCBI BioSample Accession
  
PI D'Auria G
Added By Nikos Kyrpides on 2008-11-01
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center
  
Collaborating Institute ANRT (France)
Funding Agency
  
Project Description
Clinical strain from a perianal abscess  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(24):7008-9 Complete genome sequence of Acidaminococcus intestini RYC-MR95, a Gram-negative bacterium from the phylum Firmicutes.
Other Publications
  
PROJECT COMPOSITION
Studies Acidaminococcus intestini RyC-MR95
Analysis Projects Acidaminococcus intestini RyC-MR95
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004062
Organism Name
Acidaminococcus intestini RyC-MR95  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Acidaminococcus  
Genus Synonyms
  
Species
Acidaminococcus intestini  
Subspecies
  
Species Synonyms
  
Strain
RYC-MR95  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 568816
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Acidaminococcales  
NCBI Family
Acidaminococcaceae  
NCBI Genus
Acidaminococcus  
NCBI Species
Acidaminococcus intestini  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Skin  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Opportunistic infection
Known Habitats Host
Human intestinal microflora
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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