Studies
|
54,322 |
|
Biosamples
|
180,982 |
|
Sequencing Projects
|
496,535 |
|
Analysis Projects
|
370,846 |
| Organisms | 472,363 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0003977
|
|
Project Name
|
Acidilobus saccharovorans 345-15
|
|
Other Names
|
|
|
Legacy ER Project ID
|
13795
|
|
Legacy GOLD ID
|
Gi03271, Gc01364
|
| NCBI BioProject Name | Acidilobus saccharovorans 345-15 |
|
NCBI BioProject Accession
|
PRJNA39927 |
|
NCBI Locus Tag
|
ASAC
|
|
NCBI BioSample Accession
|
SAMN02603091 |
| PI | Bonch-Osmolovskaya EA |
| Added By | Nikos Kyrpides on 2008-07-10 |
| Last Modified By | Alejandro Rodriguez Mojica on 2018-07-27 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biotechnological |
|
Sequencing Center
|
Russian Academy of Science, Centre Bioengineering
(Russia)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Acidilobus saccharovorans genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Applied and environmental microbiology
76(16):5652-7
The genome sequence of the crenarchaeon Acidilobus saccharovorans supports a new order, Acidilobales, and suggests an important ecological role in terrestrial acidic hot springs.
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Acidilobus saccharovorans 345-15 |
| Organism |
Acidilobus saccharovorans 345-15 |
| Analysis Projects |
Acidilobus saccharovorans 345-15 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
57
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0003977 |
| Organism Name |
Acidilobus saccharovorans 345-15
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
ARCHAEAL
|
| Phylogeny |
CRENARCHAEOTA-THERMOPROTEI
|
| Genus |
Acidilobus
|
| Genus Synonyms |
|
| Species |
Acidilobus saccharovorans
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
345-15
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 16705
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.14881
|
| Exemplar Name |
Acidilobus saccharovorans
|
| Taxon DOI |
10.1601/tx.14881
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
666510 |
| NCBI Superkingdom |
Archaea
|
| NCBI Kingdom |
|
| NCBI Phylum |
Crenarchaeota
|
| NCBI Class |
Thermoprotei
|
| NCBI Order |
Acidilobales
|
| NCBI Family |
Acidilobaceae
|
| NCBI Genus |
Acidilobus
|
| NCBI Species |
Acidilobus saccharovorans
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Thermal springs
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AY350586 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
Coccus-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
|
| Temperature Range |
Hyperthermophile
|
| Salinity |
|
| pH |
3.5
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Hot spring Fresh water |
| Metabolisms |
|
| Phenotypes |
Acidophile |
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
