PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0003916
|
Project Name
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Hirschia baltica ATCC 49814
|
Other Names
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|
Legacy ER Project ID
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13810
|
Legacy GOLD ID
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Gi03286, Gc01064
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NCBI BioProject Name | Hirschia baltica ATCC 49814 |
NCBI BioProject Accession
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PRJNA33191 |
NCBI Locus Tag
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Hbal
|
NCBI BioSample Accession
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SAMN02598497 |
PI | Yves Brun |
Added By |
Nikos Kyrpides
on 2008-07-11 |
Last Modified By |
JGI automated process
on 2014-08-18 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Biotechnological Bioremediation |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
|
Project Description
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Budding bacterium
|
Is JGI Project |
Yes
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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|
JGI Award DOI
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|
JGI Portal Download | Raw Sequence Data |
Genome Publications
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Standards in genomic sciences
5(3):287-97
Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)).
|
Other Publications
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|
Ignored Publications
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|
Unassigned Publications
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|
SRA Experiment |
|
PROJECT COMPOSITION | |
Study |
CSP_787681, Stalked bacteria |
Organism |
Hirschia baltica ATCC 49814 |
Analysis Projects |
Hirschia baltica ATCC 49814 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Contamination Screening Input
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DNA Amplification Method
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|
Single Cell Lysis Protocol
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Single Cell Lysis Approach
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|
Sequencing Comments
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|
DNA Amplification Kit
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|
Sequencing Technology
(MIGS-29)
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454 GS FLX |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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|
Read Size
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Vector
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|
GC Percent |
45
|
Chromosome Count |
1
|
Plasmid Count |
1
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0003916 |
Organism Name |
Hirschia baltica ATCC 49814
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-ALPHA
|
Genus |
Hirschia
|
Genus Synonyms |
|
Species |
Hirschia baltica
|
Subspecies |
|
Species Synonyms |
|
Strain |
ATCC 49814
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
ATCC 49814
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.1061
|
Exemplar Name |
Hirschia baltica
|
Taxon DOI |
10.1601/tx.1061
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
582402 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Alphaproteobacteria
|
NCBI Order |
Hyphomonadales
|
NCBI Family |
Hyphomonadaceae
|
NCBI Genus |
Hirschia
|
NCBI Species |
Hirschia baltica
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Aquatic
|
Ecosystem Type |
Non-marine Saline and Alkaline
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
114871 |
Genbank 16S ID |
X52909 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Aerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Salinity |
|
pH |
|
Cell Diameter |
0.5 - 0.6 um
|
Cell Length |
0.5 - 1 um
|
Color |
Yellow
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
None |
Known Habitats |
Marine Aquatic |
Metabolisms |
|
Phenotypes |
|
Energy Sources |
Chemoheterotroph |
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
|
Position Of Heterocysts |
|
Cysts |
|
Mode Of Reproduction |
|
Trichome |
|
Trichome Type |
|
Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
|
Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
|
Secondary Metabolites |
|
Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
|
Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
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