PROJECT NAME
GOLD Project ID
Gp0003890  
Project Name
Cycloclasticus pugetii PS-1  
Other Names
  
Legacy ER Project ID
13769  
Legacy GOLD ID
Gi03249  
NCBI BioProject Name Cycloclasticus pugetii PS-1
NCBI BioProject ID 38693
NCBI BioProject Accession
PRJNA38693  
NCBI Locus Tag
Cycpu  
NCBI BioSample Accession
SAMN02261262  
PI Herwig, Russell P
Added By Nikos Kyrpides on 2008-07-09 00:00:00.0
Last Modified By Auto script update processes on 2014-08-18 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Bioremediation
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Cycloclasticus pugetii PS-1 genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies CSP_300133_795706
Analysis Projects Cycloclasticus pugetii PS-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Unknown
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003890
Organism Name
Cycloclasticus pugetii PS-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Cycloclasticus  
Genus Synonyms
  
Species
Cycloclasticus pugetii  
Subspecies
  
Species Synonyms
  
Strain
PS-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NCIMB 13437  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2315  
Exemplar Name
Cycloclasticus pugetii  
Taxon DOI
10.1601/tx.2315  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 655438
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Thiotrichales  
NCBI Family
Piscirickettsiaceae  
NCBI Genus
Cycloclasticus  
NCBI Species
Cycloclasticus pugetii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID U12624
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
20C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Sediment
Metabolisms PAH-degrading
Phenotypes
  
Energy Sources
  

 

 

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