PROJECT NAME
GOLD Project ID
Gp0003876  
Project Name
Fusobacterium periodonticum ATCC 33693  
Other Names
  
Legacy ER Project ID
13776  
Legacy GOLD ID
Gi03251  
NCBI BioProject Name Fusobacterium periodonticum ATCC 33693
NCBI BioProject ID 30495
NCBI BioProject Accession
PRJNA30495  
NCBI Locus Tag
FUSPEROL  
NCBI BioSample Accession
SAMN00008828  
PI Weinstock, G
Added By Heather Creasy on 2008-07-10
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Human Pathogen
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Fusobacterium periodonticum ATCC 33693
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
27  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003876
Organism Name
Fusobacterium periodonticum ATCC 33693  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FUSOBACTERIA  
Genus
Fusobacterium  
Genus Synonyms
  
Species
Fusobacterium periodonticum  
Subspecies
  
Species Synonyms
  
Strain
ATCC 33693  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33693  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8362  
Exemplar Name
Fusobacterium periodonticum  
Taxon DOI
10.1601/tx.8362  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 546275
NCBI Kingdom
  
NCBI Phylum
Fusobacteria  
NCBI Class
Fusobacteriia  
NCBI Order
Fusobacteriales  
NCBI Family
Fusobacteriaceae  
NCBI Genus
Fusobacterium  
NCBI Species
Fusobacterium periodonticum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID X55405
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Periodontitis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph
HMP METADATA
HMP ID
398  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-06-24  
Date Sequencing Begins
2009-02-23  
Date Draft Sequencing Completed
2009-04-06  
Cross Reference ID
HOMD: tax_201  

 

 

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