PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0003688
|
Project Name
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Thermosphaera aggregans M11TL, DSM 11486
|
Other Names
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|
Legacy ER Project ID
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13527
|
Legacy GOLD ID
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Gi02946, Gc01275
|
NCBI BioProject Name | Thermosphaera aggregans DSM 11486 |
NCBI BioProject ID
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36571 |
NCBI BioProject Accession
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PRJNA36571 |
NCBI Locus Tag
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Tagg
|
NCBI BioSample Accession
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SAMN02598509 |
PI | Jonathan Eisen |
Added By |
Nikos Kyrpides
on 2008-01-19 |
Last Modified By |
Jyothi Mallajosyula
on 2014-08-04 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Comparative analysis Tree of Life GEBA |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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Leibniz Institute
(Germany)
|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
Project Description
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This strain will be used for comparative genome analysis
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
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Isolation |
Database
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|
Genome Publications
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Standards in genomic sciences
2(3):245-59
Complete genome sequence of Thermosphaera aggregans type strain (M11TL).
|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
A Genomic Encyclopedia of Bacteria and Archaea (GEBA) |
Organism |
Thermosphaera aggregans M11TL, DSM 11486 |
Analysis Projects |
Thermosphaera aggregans M11TL, DSM 11486 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
---|---|
Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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454 GS FLX Titanium Illumina |
Library Method
(MIGS-28)
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454 standard, 454 pair end, Illumina
|
Number Of Reads
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|
Read Size
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|
Vector
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|
GC Percent |
47
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0003688 |
Organism Name |
Thermosphaera aggregans M11TL, DSM 11486
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
ARCHAEAL
|
Phylogeny |
CRENARCHAEOTA-THERMOPROTEI
|
Genus |
Thermosphaera
|
Genus Synonyms |
|
Species |
Thermosphaera aggregans
|
Subspecies |
|
Species Synonyms |
|
Strain |
M11TL, DSM 11486
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
DSM 11486
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.54
|
Exemplar Name |
Thermosphaera aggregans
|
Taxon DOI |
10.1601/tx.54
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
633148 |
NCBI Superkingdom |
Archaea
|
NCBI Kingdom |
|
NCBI Phylum |
Crenarchaeota
|
NCBI Class |
Thermoprotei
|
NCBI Order |
Desulfurococcales
|
NCBI Family |
Desulfurococcaceae
|
NCBI Genus |
Thermosphaera
|
NCBI Species |
Thermosphaera aggregans
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Aquatic
|
Ecosystem Type |
Thermal springs
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
162690 |
Genbank 16S ID |
X99556 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Anaerobe
|
Cell Shape |
Coccus-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Hyperthermophile
|
Temperature Optimum |
85
|
Salinity |
|
pH |
6.5
|
Cell Diameter |
0.8 um
|
Cell Length |
0.8 um
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
Singles Pairs Chains |
Diseases |
None |
Known Habitats |
Hot spring Aquatic |
Metabolisms |
|
Phenotypes |
|
Energy Sources |
Heterotroph |
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
|
Position Of Heterocysts |
|
Cysts |
|
Mode Of Reproduction |
|
Trichome |
|
Trichome Type |
|
Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
|
Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
|
Secondary Metabolites |
|
Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
|
Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
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