PROJECT NAME
GOLD Project ID
Gp0003685  
Project Name
Thermodesulfatator indicus CIR29812, DSM 15286  
Other Names
  
Legacy ER Project ID
13525  
Legacy GOLD ID
Gi02944, Gc01827  
NCBI BioProject Name Thermodesulfatator indicus DSM 15286
NCBI BioProject ID 40057
NCBI BioProject Accession
PRJNA40057  
NCBI Locus Tag
Thein  
NCBI BioSample Accession
SAMN02232057  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2008-01-19
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Thermodesulfatator indicus DSM 15286 genome project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Isolation
Database
  
Genome Publications Standards in genomic sciences 6(2):155-64 Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T)).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Thermodesulfatator indicus CIR29812, DSM 15286
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0003685
Organism Name
Thermodesulfatator indicus CIR29812, DSM 15286  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
THERMODESULFOBACTERIA  
Genus
Thermodesulfatator  
Genus Synonyms
  
Species
Thermodesulfatator indicus  
Subspecies
  
Species Synonyms
  
Strain
CIR 29812, DSM 15286  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15286  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.502  
Exemplar Name
Thermodesulfatator indicus  
Taxon DOI
10.1601/tx.502  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 667014
NCBI Kingdom
  
NCBI Phylum
Thermodesulfobacteria  
NCBI Class
Thermodesulfobacteria  
NCBI Order
Thermodesulfobacteriales  
NCBI Family
Thermodesulfobacteriaceae  
NCBI Genus
Thermodesulfatator  
NCBI Species
Thermodesulfatator indicus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF393376
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
70  
Salinity
  
pH
6.25  
Cell Diameter
0.4-0.5um  
Cell Length
0.8?1 um  
Color
Cream  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Diseases None
Known Habitats Aquatic
Deep sea
Marine
Metabolisms Sulfate reducer
Phenotypes
  
Energy Sources Chemolithoautotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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