PROJECT NAME
GOLD Project ID
Gp0003678  
Project Name
Desulfobacca acetoxidans ASRB2, DSM 11109  
Other Names
  
Legacy ER Project ID
27  
Legacy GOLD ID
Gi03015, Gc01720  
NCBI BioProject Name Desulfobacca acetoxidans DSM 11109
NCBI BioProject ID 51777
NCBI BioProject Accession
PRJNA51777  
NCBI Locus Tag
Desac  
NCBI BioSample Accession
SAMN00713603  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2008-02-05
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Desulfobacca acetoxidans DSM 11109 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Database
  
Genome Publications Standards in genomic sciences 4(3):393-401 Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Desulfobacca acetoxidans ASRB2, DSM 11109
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
53  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0003678
Organism Name
Desulfobacca acetoxidans ASRB2, DSM 11109  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Desulfobacca  
Genus Synonyms
  
Species
Desulfobacca acetoxidans  
Subspecies
  
Species Synonyms
  
Strain
ASRB2, DSM 11109  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 11109  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3671  
Exemplar Name
Desulfobacca acetoxidans  
Taxon DOI
10.1601/tx.3671  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 880072
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Syntrophobacterales  
NCBI Family
Syntrophaceae  
NCBI Genus
Desulfobacca  
NCBI Species
Desulfobacca acetoxidans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF002671
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Oval-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
1.3 um  
Cell Length
1.9-2.2 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Diseases
  
Known Habitats Bioreactor
Sludge
Metabolisms Sulfate reducer
Phenotypes
  
Energy Sources Organoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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