PROJECT NAME
GOLD Project ID
Gp0003648  
Project Name
Oceanithermus profundus 506, DSM 14977  
Other Names
  
Legacy ER Project ID
13513  
Legacy GOLD ID
Gi02932, Gc01553  
NCBI BioProject Name Oceanithermus profundus DSM 14977
NCBI BioProject ID 40223
NCBI BioProject Accession
PRJNA40223  
NCBI Locus Tag
Ocepr  
NCBI BioSample Accession
SAMN00138957  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2008-01-19
Last Modified By Tatiparthi B. Reddy on 2014-04-21
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Oceanithermus profundus DSM 14977 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Isolation
Database
  
Genome Publications Standards in genomic sciences 4(2):210-20 Complete genome sequence of Oceanithermus profundus type strain (506).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Oceanithermus profundus 506, DSM 14977
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0003648
Organism Name
Oceanithermus profundus 506, DSM 14977  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
DEINOCOCCUS-THERMUS  
Genus
Oceanithermus  
Genus Synonyms
  
Species
Oceanithermus profundus  
Subspecies
  
Species Synonyms
  
Strain
506, DSM 14977  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 14977  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.540  
Exemplar Name
Oceanithermus profundus  
Taxon DOI
10.1601/tx.540  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 670487
NCBI Kingdom
  
NCBI Phylum
Deinococcus-Thermus  
NCBI Class
Deinococci  
NCBI Order
Thermales  
NCBI Family
Thermaceae  
NCBI Genus
Oceanithermus  
NCBI Species
Oceanithermus profundus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ430586
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
60  
Salinity
  
pH
7.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Deep sea
Marine
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganoheterotroph
Lithoheterotroph
Organotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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