PROJECT INFORMATION
GOLD Project ID
Gp0003647  
Project Name
Natronococcus occultus SP4, DSM 3396  
Other Names
  
Legacy ER Project ID
13512  
Legacy GOLD ID
Gi02931, Gc02471  
NCBI BioProject Name Natronococcus occultus SP4
NCBI BioProject ID 46985
NCBI BioProject Accession PRJNA46985
NCBI Locus Tag
Natoc  
NCBI BioSample Accession SAMN02261263
PI Jonathan Eisen
Added By Nikos Kyrpides on 2008-01-19
Last Modified By Jon Bertsch on 2014-04-15
Project Comments
  
Project Status
Complete and Published  
Project Relevance Tree of Life
Biotechnological
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Natronococcus occultus SP4 Genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
MicrobeWiki
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Natronococcus occultus SP4, DSM 3396
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0003647
Organism Name
Natronococcus occultus SP4, DSM 3396  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Natronococcus  
Genus Synonyms
  
Species
Natronococcus occultus  
Subspecies
  
Species Synonyms
  
Strain
SP4, DSM 3396  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 3396  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.351  
Exemplar Name
Natronococcus occultus  
Taxon DOI
10.1601/tx.351  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 694430
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Natrialbales  
NCBI Family
Natrialbaceae  
NCBI Genus
Natronococcus  
NCBI Species
Natronococcus occultus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID Z28378
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
Halophile  
pH
9.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Clusters
Diseases
  
Known Habitats Aquatic
Soda lakes
Metabolisms
  
Phenotypes Alkaliphile
Energy Sources Heterotroph

 

 

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