PROJECT NAME
GOLD Project ID
Gp0003644  
Project Name
Bifidobacterium gallicum DSM 20093, LMG 11596  
Other Names
  
Legacy ER Project ID
13235  
Legacy GOLD ID
Gi02656  
NCBI BioProject Name Bifidobacterium gallicum DSM 20093
NCBI BioProject ID 30751
NCBI BioProject Accession
PRJNA30751  
NCBI Locus Tag
BIFGAL  
NCBI BioSample Accession
SAMN02299421  
PI Human Gut Community Users
Added By Heather Creasy on 2007-12-22
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Comparative analysis
Human Gut Microbiome Initiative (HGMI)
Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Entrez
HMP
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Bifidobacterium gallicum DSM 20093, LMG 11596
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
646509  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003644
Organism Name
Bifidobacterium gallicum DSM 20093, LMG 11596  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Bifidobacterium  
Genus Synonyms
  
Species
Bifidobacterium gallicum  
Subspecies
  
Species Synonyms
  
Strain
P6  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 20093  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7691  
Exemplar Name
Bifidobacterium gallicum  
Taxon DOI
10.1601/tx.7691  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 561180
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Bifidobacteriales  
NCBI Family
Bifidobacteriaceae  
NCBI Genus
Bifidobacterium  
NCBI Species
Bifidobacterium gallicum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID D86189
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human intestinal microflora
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
172  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-07-22  
Date Sequencing Begins
2008-08-18  
Date Draft Sequencing Completed
2008-08-20  
Cross Reference ID
  

 

 

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