PROJECT INFORMATION
GOLD Project ID
Gp0003617  
Project Name
Methanoplanus limicola M3, DSM 2279  
Other Names
  
Legacy ER Project ID
13504  
Legacy GOLD ID
Gi02923  
NCBI BioProject Name Methanoplanus limicola DSM 2279
NCBI BioProject ID 61291
NCBI BioProject Accession PRJNA61291
NCBI Locus Tag
Metlim  
NCBI BioSample Accession SAMN02261391
PI Jonathan Eisen
Added By Nikos Kyrpides on 2008-01-18
Last Modified By Hema Katta on 2018-12-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
A Genomic Encyclopedia of Bacteria and Archaea (GEBA)  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 9(3):1076-88 Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Organism Methanoplanus limicola M3, DSM 2279
Analysis Projects Methanoplanus limicola M3, DSM 2279
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454 GS FLX Titanium
Library Method (MIGS-28)
Three genomic libraries: one 454 pyrosequence standard library, one 454 PE library (5 kb insert size), one Illumina library  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003617
Organism Name
Methanoplanus limicola M3, DSM 2279  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanoplanus  
Genus Synonyms
  
Species
Methanoplanus limicola  
Subspecies
  
Species Synonyms
  
Strain
M3, DSM 2279  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 2279  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.207  
Exemplar Name
Methanoplanus limicola  
Taxon DOI
10.1601/tx.207  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 937775
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanomicrobiales  
NCBI Family
Methanomicrobiaceae  
NCBI Genus
Methanoplanus  
NCBI Species
Methanoplanus limicola  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M59143
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Mud
Metabolisms Methanogen
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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