PROJECT NAME
GOLD Project ID
Gp0003594  
Project Name
Aeromicrobium marinum DSM 15272  
Other Names
  
Legacy ER Project ID
13183  
Legacy GOLD ID
Gi02604  
NCBI BioProject Name Aeromicrobium marinum DSM 15272
NCBI BioProject ID 34545
NCBI BioProject Accession
PRJNA34545  
NCBI Locus Tag
HMPREF0063  
NCBI BioSample Accession
  
PI BCM-HGSC
Added By Heather Creasy on 2007-12-09 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Comparative analysis
Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Isolation
Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Aeromicrobium marinum DSM 15272
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal Level 5: Non-contiguous Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
751231  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003594
Organism Name
Aeromicrobium marinum DSM 15272  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Aeromicrobium  
Genus Synonyms
  
Species
Aeromicrobium marinum  
Subspecies
  
Species Synonyms
  
Strain
DSM 15272  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15272  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6652  
Exemplar Name
Aeromicrobium marinum  
Taxon DOI
10.1601/tx.6652  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 585531
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Propionibacteriales  
NCBI Family
Nocardioidaceae  
NCBI Genus
Aeromicrobium  
NCBI Species
Aeromicrobium marinum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY166703
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Host
Human oral cavity
Marine
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
HMP METADATA
HMP ID
63  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
DSM 15272  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2009-02-09  
Date Draft Sequencing Completed
2009-02-09  
Cross Reference ID
  

 

 

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