Studies
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53,971 |
|
Biosamples
|
170,223 |
|
Sequencing Projects
|
480,739 |
|
Analysis Projects
|
363,298 |
| Organisms | 467,901 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0003592
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Project Name
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Actinomyces urogenitalis DSM 15434
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Other Names
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Legacy ER Project ID
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13181
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Legacy GOLD ID
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Gi02602
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| NCBI BioProject Name | Actinomyces urogenitalis DSM 15434 | ||||||||||||||||||||||||||||||||||||
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NCBI BioProject Accession
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PRJNA31429 |
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NCBI Locus Tag
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HMPREF0058
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NCBI BioSample Accession
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SAMN00002545 |
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| PI | BCM-HGSC | ||||||||||||||||||||||||||||||||||||
| Added By |
Heather Creasy
on 2007-12-09 |
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| Last Modified By |
Hema Katta
on 2019-04-01 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Human Microbiome Project (HMP) Medical |
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Sequencing Center
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Baylor College of Medicine
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Collaborating Institute
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Funding Agency
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NIH
(USA)
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Project Description
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Reference genome for the Human Microbiome Project
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||||||
| Study |
Human Microbiome Project (HMP) Reference Genomes |
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| Organism |
Actinomyces urogenitalis DSM 15434 |
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| Analysis Projects |
Actinomyces urogenitalis DSM 15434 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
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Finishing Goal
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Level 2: High-Quality Draft |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
|
454 GS FLX Illumina |
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Library Method
(MIGS-28)
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Library Layout
|
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Library Screening Method
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Number Of Reads
|
402269
|
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Read Size
|
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Vector
|
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| GC Percent |
69
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| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0003592 |
| Organism Name |
Actinomyces urogenitalis DSM 15434
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
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| Genus |
Actinomyces
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| Genus Synonyms |
|
| Species |
Actinomyces urogenitalis
|
| Subspecies |
|
| Species Synonyms |
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| Strain |
DSM 15434
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 15434
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.5806
|
| Exemplar Name |
Actinomyces urogenitalis
|
| Taxon DOI |
10.1601/tx.5806
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
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ORGANISM TAXONOMY
|
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| NCBI Taxonomy ID |
525246 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
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| NCBI Class |
Actinomycetia
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| NCBI Order |
Actinomycetales
|
| NCBI Family |
Actinomycetaceae
|
| NCBI Genus |
Actinomyces
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| NCBI Species |
Actinomyces urogenitalis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
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| Ecosystem Type |
Reproductive system
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| Ecosystem Subtype |
Vagina
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AJ243791 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Microaerophilic
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
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| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
|
| Known Habitats |
Host Human vaginal microflora Urogenital tract |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
| HMP METADATA | |
|---|---|
| HMP ID |
58
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Urogenital tract
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| HMP Isolation Body Sample Subsite |
Vaginal
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| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
DSM 15434
|
| Project Comments |
forms hyphae
|
| DNA Received |
Yes
|
| Date DNA Received |
|
| Date Sequencing Begins |
2008-11-07
|
| Date Draft Sequencing Completed |
2008-11-07
|
| Cross Reference ID |
|
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