PROJECT INFORMATION | |||||||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0003592
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Project Name
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Actinomyces urogenitalis DSM 15434
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Other Names
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Legacy ER Project ID
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13181
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Legacy GOLD ID
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Gi02602
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NCBI BioProject Name | Actinomyces urogenitalis DSM 15434 | ||||||||||||||||||||||||||||||||||||
NCBI BioProject Accession
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PRJNA31429 |
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NCBI Locus Tag
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HMPREF0058
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NCBI BioSample Accession
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SAMN00002545 |
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PI | BCM-HGSC | ||||||||||||||||||||||||||||||||||||
Added By |
Heather Creasy
on 2007-12-09 |
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Last Modified By |
Hema Katta
on 2019-04-01 |
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Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Human Microbiome Project (HMP) Medical |
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Sequencing Center
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Baylor College of Medicine
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Collaborating Institute
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Funding Agency
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NIH
(USA)
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Project Description
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Reference genome for the Human Microbiome Project
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Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||||||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||||||
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||||||
Study |
Human Microbiome Project (HMP) Reference Genomes |
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Organism |
Actinomyces urogenitalis DSM 15434 |
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Analysis Projects |
Actinomyces urogenitalis DSM 15434 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
Finishing Goal
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Level 2: High-Quality Draft |
Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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454 GS FLX Illumina |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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402269
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Read Size
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Vector
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GC Percent |
69
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0003592 |
Organism Name |
Actinomyces urogenitalis DSM 15434
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
ACTINOBACTERIA
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Genus |
Actinomyces
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Genus Synonyms |
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Species |
Actinomyces urogenitalis
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Subspecies |
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Species Synonyms |
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Strain |
DSM 15434
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
DSM 15434
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.5806
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Exemplar Name |
Actinomyces urogenitalis
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Taxon DOI |
10.1601/tx.5806
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
525246 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Actinobacteria
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NCBI Class |
Actinomycetia
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NCBI Order |
Actinomycetales
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NCBI Family |
Actinomycetaceae
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NCBI Genus |
Actinomyces
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NCBI Species |
Actinomyces urogenitalis
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ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Mammals: Human
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Ecosystem Type |
Reproductive system
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Ecosystem Subtype |
Vagina
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Specific Ecosystem |
Unclassified
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
AJ243791 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Microaerophilic
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Cell Shape |
Rod-shaped
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Motility |
Nonmotile
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Sporulation |
Nonsporulating
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Temperature Range |
Mesophile
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram+
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Biotic Relationships | Free living |
Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
Host Human vaginal microflora Urogenital tract |
Metabolisms |
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Phenotypes |
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Energy Sources |
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HMP METADATA | |
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HMP ID |
58
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Show in DACC? |
Yes
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HMP Project Status |
Complete
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BEI Status |
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NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
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Isolate Suggestion Source |
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HMP Isolation Body Sample Site |
Urogenital tract
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HMP Isolation Body Sample Subsite |
Vaginal
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HMP Finishing Goal |
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Source, Sample & Medical Relevance Comments |
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Isolate Availability Comments |
DSM 15434
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Project Comments |
forms hyphae
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DNA Received |
Yes
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Date DNA Received |
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Date Sequencing Begins |
2008-11-07
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Date Draft Sequencing Completed |
2008-11-07
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Cross Reference ID |
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