Studies
|
26,131 |
|
Biosamples
|
16,008 |
|
Sequencing Projects
|
97,339 |
|
Analysis Projects
|
79,070 |
| Organisms | 239,109 |
| PROJECT NAME | |
|---|---|
|
GOLD Project ID
|
Gp0003592
|
|
Project Name
|
Actinomyces urogenitalis DSM 15434
|
|
Other Names
|
|
|
Legacy ER Project ID
|
13181
|
|
Legacy GOLD ID
|
Gi02602
|
| NCBI BioProject Name | Actinomyces urogenitalis DSM 15434 |
|
NCBI BioProject ID
|
31429 |
|
NCBI BioProject Accession
|
PRJNA31429
|
|
NCBI Locus Tag
|
HMPREF0058
|
|
NCBI BioSample Accession
|
SAMN00002545
|
| PI | BCM-HGSC |
| Added By |
Heather Creasy
on 2007-12-09 |
| Last Modified By |
Auto script update processes
on 2014-03-26 |
| Project Comments |
|
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| PROJECT INFORMATION | |
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Human Microbiome Project (HMP) Medical |
|
Sequencing Center
|
Baylor College of Medicine
|
|
Collaborating Institute
|
|
|
Funding Agency
|
NIH
(USA)
|
|
Project Description
|
Reference genome for the Human Microbiome Project
|
|
Project Information Visibility
|
Public
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
HMP Isolation Entrez Taxonomy Wikipedia |
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
| Isolation Publications |
|
| PROJECT COMPOSITION | |
| Studies |
Human Microbiome Project (HMP) Reference Genomes |
| Analysis Projects |
Actinomyces urogenitalis DSM 15434 |
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
|
Sequencing Quality
(MIGS-31)
|
Level 2: High-Quality Draft |
|
Finishing Goal
|
Level 2: High-Quality Draft |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
454-GS-FLX Illumina |
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
402269
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
69
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0003592 |
| Organism Name |
Actinomyces urogenitalis DSM 15434
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Actinomyces
|
| Genus Synonyms |
|
| Species |
Actinomyces urogenitalis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DSM 15434
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
DSM 15434
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.5806
|
| Exemplar Name |
Actinomyces urogenitalis
|
| Taxon DOI |
10.1601/tx.5806
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
525246 |
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Actinobacteria
|
| NCBI Order |
Actinomycetales
|
| NCBI Family |
Actinomycetaceae
|
| NCBI Genus |
Actinomyces
|
| NCBI Species |
Actinomyces urogenitalis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Reproductive system
|
| Ecosystem Subtype |
Vagina
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AJ243791 |
| Synonym List |
|
| GENERAL PROPERTIES | |||||
|---|---|---|---|---|---|
| Oxygen Requirement |
Microaerophilic
|
||||
| Cell Shape |
Rod-shaped
|
||||
| Motility |
Nonmotile
|
||||
| Sporulation |
Nonsporulating
|
||||
| Temperature Range |
Mesophile
|
||||
| Temperature Optimum |
|
||||
| Salinity |
|
||||
| pH |
|
||||
| Cell Diameter |
|
||||
| Cell Length |
|
||||
| Color |
|
||||
| Gram Staining |
Gram+
|
||||
| Biotic Relationships |
|
||||
| Symbiotic Physical Interaction |
|
||||
| Symbiotic Relationship |
|
||||
| Symbiont Name |
|
||||
| Symbiont Taxon ID |
|
||||
| Cell Arrangements |
|
||||
| Diseases |
|
||||
| Known Habitats |
Host Human vaginal microflora Urogenital tract |
||||
| Metabolisms |
|
||||
| Phenotypes |
|
||||
| Energy Sources |
|
||||
| HMP METADATA | |
|---|---|
| HMP ID |
58
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Urogenital tract
|
| HMP Isolation Body Sample Subsite |
Vaginal
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
DSM 15434
|
| Project Comments |
forms hyphae
|
| DNA Received |
Yes
|
| Date DNA Received |
|
| Date Sequencing Begins |
2008-11-07
|
| Date Draft Sequencing Completed |
2008-11-07
|
| Cross Reference ID |
|
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